Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

(2016) Nicholas H. Putnam et al.   GENOME RESEARCH

Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture

(2016) Burkhard Steuernagel et al.   NATURE BIOTECHNOLOGY

Wheat Fhb1 encodes a chimeric lectin with agglutinin domains and a pore-forming toxin-like domain conferring resistance to Fusarium head blight

(2016) Nidhi Rawat et al.   NATURE GENETICS

Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: a case study to map yellow rust resistance in hexaploid wheat

(2016) Laura-Jayne Gardiner et al.   PLANT JOURNAL

Characterization of Lr75: a partial, broad-spectrum leaf rust resistance gene in wheat

(2016) Jyoti Singla et al.   THEORETICAL AND APPLIED GENETICS

A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes

(2015) Katherine W Jordan et al.   GENOME BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Major haplotype divergence including multiple germin-like protein genes, at the wheat Sr2 adult plant stem rust resistance locus

(2014) Rohit Mago et al.   BMC PLANT BIOLOGY

Structural and functional partitioning of bread wheat chromosome 3B

(2014) F. Choulet et al.   SCIENCE

Physiologic specialization ofPuccinia triticina, the causal agent of wheat leaf rust, in Canada in 2009

(2013) B. D. McCallum et al.   CANADIAN JOURNAL OF PLANT PATHOLOGY

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

(2013) Jizeng Jia et al.   NATURE

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

FISHIS: Fluorescence In Situ Hybridization in Suspension and Chromosome Flow Sorting Made Easy

(2013) Debora Giorgi et al.   PLoS One

Insular Organization of Gene Space in Grass Genomes

(2013) Andrea Gottlieb et al.   PLoS One

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

(2013) M.-C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Gene Sr33, an Ortholog of Barley Mla Genes, Encodes Resistance to Wheat Stem Rust Race Ug99

(2013) S. Periyannan et al.   SCIENCE

Leaf Rust of Wheat: Pathogen Biology, Variation and Host Resistance

(2013) James Kolmer   Forests

Chromosomes in the flow to simplify genome analysis

(2012) Jaroslav Doležel et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Maize HapMap2 identifies extant variation from a genome in flux

(2012) Jer-Ming Chia et al.   NATURE GENETICS

Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno

(2012) Margarita Shatalina et al.   PLANT BIOTECHNOLOGY JOURNAL

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

LRR Conservation Mapping to Predict Functional Sites within Protein Leucine-Rich Repeat Domains

(2011) Laura Helft et al.   PLoS One

Meraculous: De Novo Genome Assembly with Short Paired-End Reads

(2011) Jarrod A. Chapman et al.   PLoS One

Plant intracellular innate immune receptor Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1) is activated at, and functions on, the plasma membrane

(2011) Z. Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development of Chromosome-Specific BAC Resources for Genomics of Bread Wheat

(2010) J. Šafář et al.   CYTOGENETIC AND GENOME RESEARCH

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley

(2008) Hana Šimková et al.   BMC GENOMICS