GAERF: predicting lncRNA-disease associations by graph auto-encoder and random forest
出版年份 2020 全文链接
标题
GAERF: predicting lncRNA-disease associations by graph auto-encoder and random forest
作者
关键词
-
出版物
BRIEFINGS IN BIOINFORMATICS
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2020-12-02
DOI
10.1093/bib/bbaa391
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- LncRNA SNHG5 promotes nasopharyngeal carcinoma progression by regulating miR-1179/HMGB3 axis
- (2020) Dengtao Liu et al. BMC CANCER
- Identification of the Prognosis-Related lncRNAs and Genes in Gastric Cancer
- (2020) Xiaohui Su et al. Frontiers in Genetics
- Machine learning prediction of oncology drug targets based on protein and network properties
- (2020) Zoltán Dezső et al. BMC BIOINFORMATICS
- A random forest based computational model for predicting novel lncRNA-disease associations
- (2020) Dengju Yao et al. BMC BIOINFORMATICS
- lncRNA CRNDE promotes the proliferation and metastasis by acting as sponge miR-539-5p to regulate POU2F1 expression in HCC
- (2020) Zhixi Li et al. BMC CANCER
- LncRNA SNHG7 promotes the proliferation of nasopharyngeal carcinoma by miR-514a-5p/ELAVL1 axis
- (2020) Weiqun Hu et al. BMC CANCER
- MSCHLMDA: Multi-Similarity Based Combinative Hypergraph Learning for Predicting MiRNA-Disease Association
- (2020) Qingwen Wu et al. Frontiers in Genetics
- LncRNA UCA1 Induces Acquired Resistance to Gefitinib by Epigenetically Silencing CDKN1A Expression in Non-small-Cell Lung Cancer
- (2020) Tianwei Xu et al. Frontiers in Oncology
- LncRNA MEG3 rs3087918 was associated with a decreased breast cancer risk in a Chinese population: a case-control study
- (2020) Yi Zheng et al. BMC CANCER
- Predicting drug-drug interactions using multi-modal deep auto-encoders based network embedding and positive-unlabeled learning
- (2020) Yang Zhang et al. METHODS
- Variational graph auto-encoders for miRNA-disease association prediction
- (2020) Yulian Ding et al. METHODS
- Comprehensive Analysis of Differentially Expressed lncRNAs in Gastric Cancer
- (2020) Nan Xiao et al. Frontiers in Cell and Developmental Biology
- Learning Representations to Predict Intermolecular Interactions on Large-Scale Heterogeneous Molecular Association Network
- (2020) Hai-Cheng Yi et al. iScience
- Graph embedding-based novel protein interaction prediction via higher-order graph convolutional network
- (2020) Ze Xiao et al. PLoS One
- A Probabilistic Matrix Factorization Method for Identifying lncRNA-disease Associations
- (2019) Zhanwei Xuan et al. Genes
- LncRNA WWC2-AS1 functions AS a novel competing endogenous RNA in the regulation of FGF2 expression by sponging miR-16 in radiation-induced intestinal fibrosis
- (2019) Ju-Mei Zhou et al. BMC CANCER
- CNNDLP: A Method Based on Convolutional Autoencoder and Convolutional Neural Network with Adjacent Edge Attention for Predicting lncRNA–Disease Associations
- (2019) Ping Xuan et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- The implication of lncRNA expression pattern and potential function of lncRNA RP4‐576H24.2 in acute myeloid leukemia
- (2019) Jifu Zheng et al. Cancer Medicine
- Predicting lncRNA-miRNA Interaction via Graph Convolution Auto-Encoder
- (2019) Yu-An Huang et al. Frontiers in Genetics
- Prediction of Potential miRNA–Disease Associations Through a Novel Unsupervised Deep Learning Framework with Variational Autoencoder
- (2019) Li Zhang et al. Cells
- Graph Convolutional Network and Convolutional Neural Network Based Method for Predicting lncRNA-Disease Associations
- (2019) Xuan et al. Cells
- Long Non-coding RNAs as Communicators and Mediators Between the Tumor Microenvironment and Cancer Cells
- (2019) Di Chen et al. Frontiers in Oncology
- Predicting drug-disease associations with heterogeneous network embedding
- (2019) Kai Yang et al. CHAOS
- Long Non-Coding RNA in Drug Resistance of Non-Small Cell Lung Cancer: A Mini Review
- (2019) Ruizheng Sun et al. Frontiers in Pharmacology
- Prediction of lncRNA–disease associations based on inductive matrix completion
- (2018) Chengqian Lu et al. BIOINFORMATICS
- DrPOCS: Drug repositioning based on projection onto convex sets
- (2018) Yin-Ying Wang et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- MALAT1: a druggable long non-coding RNA for targeted anti-cancer approaches
- (2018) Nicola Amodio et al. Journal of Hematology & Oncology
- Silencing of Long Non-coding RNA MIAT Sensitizes Lung Cancer Cells to Gefitinib by Epigenetically Regulating miR-34a
- (2018) Yunfeng Fu et al. Frontiers in Pharmacology
- Computational models for lncRNA function prediction and functional similarity calculation
- (2018) Xing Chen et al. Briefings in Functional Genomics
- OUP accepted manuscript
- (2018) NUCLEIC ACIDS RESEARCH
- Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers
- (2018) Yue Gao et al. NUCLEIC ACIDS RESEARCH
- Novel Human miRNA-Disease Association Inference Based on Random Forest
- (2018) Xing Chen et al. Molecular Therapy-Nucleic Acids
- EmDL: Extracting miRNA-Drug Interactions from Literature
- (2017) Wenbin Xie et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- mTD: A database of microRNAs affecting therapeutic effects of drugs
- (2017) Xiao Chen et al. Journal of Genetics and Genomics
- Predicting new indications of compounds with a network pharmacology approach: Liuwei Dihuang Wan as a case study
- (2017) Yin-Ying Wang et al. Oncotarget
- BRWLDA: bi-random walks for predicting lncRNA-disease associations
- (2017) Guoxian Yu et al. Oncotarget
- Global network random walk for predicting potential human lncRNA-disease associations
- (2017) Changlong Gu et al. Scientific Reports
- Identifying Disease Associated miRNAs Based on Protein Domains
- (2016) Gui-Min Qin et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- LncRNA GClnc1 Promotes Gastric Carcinogenesis and May Act as a Modular Scaffold of WDR5 and KAT2A Complexes to Specify the Histone Modification Pattern
- (2016) T.-T. Sun et al. Cancer Discovery
- PSA and beyond: alternative prostate cancer biomarkers
- (2016) Sharanjot Saini CELLULAR ONCOLOGY
- IRWRLDA: improved random walk with restart for lncRNA-disease association prediction
- (2016) Xing Chen et al. Oncotarget
- Integrative analysis of mutational and transcriptional profiles reveals driver mutations of metastatic breast cancers
- (2016) Ji-Hyun Lee et al. Cell Discovery
- LncRNAs: emerging biomarkers in gastric cancer
- (2015) Yu Gu et al. Future Oncology
- Prioritizing candidate disease-related long non-coding RNAs by walking on the heterogeneous lncRNA and disease network
- (2015) Meng Zhou et al. Molecular BioSystems
- The landscape of long noncoding RNAs in the human transcriptome
- (2015) Matthew K Iyer et al. NATURE GENETICS
- Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers
- (2015) Shangwei Ning et al. NUCLEIC ACIDS RESEARCH
- Junk DNA and the long non-coding RNA twist in cancer genetics
- (2015) H Ling et al. ONCOGENE
- Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA
- (2015) Xing Chen Scientific Reports
- KATZLDA: KATZ measure for the lncRNA-disease association prediction
- (2015) Xing Chen Scientific Reports
- Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity
- (2015) Xing Chen et al. Scientific Reports
- Identifying cancer-related microRNAs based on gene expression data
- (2014) Xing-Ming Zhao et al. BIOINFORMATICS
- Network-based biomarkers for complex diseases
- (2014) Xing-Ming Zhao et al. JOURNAL OF THEORETICAL BIOLOGY
- Novel human lncRNA–disease association inference based on lncRNA expression profiles
- (2013) Xing Chen et al. BIOINFORMATICS
- starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
- (2013) Jun-Hao Li et al. NUCLEIC ACIDS RESEARCH
- HMDD v2.0: a database for experimentally supported human microRNA and disease associations
- (2013) Yang Li et al. NUCLEIC ACIDS RESEARCH
- Long non-coding RNAs and cancer: a new frontier of translational research?
- (2012) R Spizzo et al. ONCOGENE
- No-Nonsense Functions for Long Noncoding RNAs
- (2011) Takashi Nagano et al. CELL
- Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases
- (2010) Dong Wang et al. BIOINFORMATICS
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