Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity
出版年份 2015 全文链接
标题
Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity
作者
关键词
-
出版物
Scientific Reports
Volume 5, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-06-11
DOI
10.1038/srep11338
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- iMiRNA-PseDPC: microRNA precursor identification with a pseudo distance-pair composition approach
- (2015) Bin Liu et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- miRNA-dis: microRNA precursor identification based on distance structure status pairs
- (2015) Bin Liu et al. Molecular BioSystems
- Identification of Real MicroRNA Precursors with a Pseudo Structure Status Composition Approach
- (2015) Bin Liu et al. PLoS One
- LncRNA: A link between RNA and cancer
- (2014) Guodong Yang et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Genetic variation in the non-coding genome: Involvement of micro-RNAs and long non-coding RNAs in disease
- (2014) Barbara Hrdlickova et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
- HOTAIR long non-coding RNA is a negative prognostic factor not only in primary tumors, but also in the blood of colorectal cancer patients
- (2014) M. Svoboda et al. CARCINOGENESIS
- Long non-coding RNA in health and disease
- (2014) Philipp G. Maass et al. JOURNAL OF MOLECULAR MEDICINE-JMM
- A Computational Framework to Infer Human Disease-Associated Long Noncoding RNAs
- (2014) Ming-Xi Liu et al. PLoS One
- A bioinformatics method for predicting long noncoding RNAs associated with vascular disease
- (2014) JianWei Li et al. Science China-Life Sciences
- A microRNA gene signature for identification of lung cancer
- (2014) Zhiqiang Xue et al. SURGICAL ONCOLOGY-OXFORD
- Semi-supervised learning for potential human microRNA-disease associations inference
- (2014) Xing Chen et al. Scientific Reports
- Connect the dots
- (2013) Yifei Li et al. Autophagy
- Novel human lncRNA–disease association inference based on lncRNA expression profiles
- (2013) Xing Chen et al. BIOINFORMATICS
- Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes
- (2013) Hongbo Shi et al. BMC Systems Biology
- Long noncoding RNAs and the genetics of cancer
- (2013) S W Cheetham et al. BRITISH JOURNAL OF CANCER
- Long non-coding RNAs: A new frontier in the study of human diseases
- (2013) Xuefei Shi et al. CANCER LETTERS
- Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins
- (2013) Mitchell Guttman et al. CELL
- Long Non-Coding RNAs and Complex Human Diseases
- (2013) Jing Li et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Induction of long intergenic non-coding RNA HOTAIR in lung cancer cells by type I collagen
- (2013) Yan Zhuang et al. Journal of Hematology & Oncology
- Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors
- (2013) Ping Xuan et al. PLoS One
- Deciphering Genomic Alterations in Colorectal Cancer through Transcriptional Subtype-Based Network Analysis
- (2013) Jing Zhu et al. PLoS One
- Long noncoding RNA: an emerging paradigm of cancer research
- (2013) Man-Tang Qiu et al. TUMOR BIOLOGY
- NEAT1 Long Noncoding RNA and Paraspeckle Bodies Modulate HIV-1 Posttranscriptional Expression
- (2013) Q. Zhang et al. mBio
- Mammalian ncRNA-disease repository: a global view of ncRNA-mediated disease network
- (2013) Y Wang et al. Cell Death & Disease
- Genomics and epigenomics of colorectal cancer
- (2013) Michal-Ruth Schweiger et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- Lung Cancer Genotype-Based Therapy and Predictive Biomarkers: Present and Future
- (2012) Philip T. Cagle et al. ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE
- Long non-coding RNAs and human disease
- (2012) Lorna W. Harries BIOCHEMICAL SOCIETY TRANSACTIONS
- Epigenetics of colorectal cancer
- (2012) F Migheli et al. CLINICAL GENETICS
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- RWRMDA: predicting novel human microRNA–disease associations
- (2012) Xing Chen et al. Molecular BioSystems
- Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs
- (2012) V. A. Moran et al. NUCLEIC ACIDS RESEARCH
- LncRNADisease: a database for long-non-coding RNA-associated diseases
- (2012) Geng Chen et al. NUCLEIC ACIDS RESEARCH
- Long non-coding RNAs and cancer: a new frontier of translational research?
- (2012) R Spizzo et al. ONCOGENE
- A Genetic Variant in Long Non-Coding RNA HULC Contributes to Risk of HBV-Related Hepatocellular Carcinoma in a Chinese Population
- (2012) Yao Liu et al. PLoS One
- Prediction of Disease-Related Interactions between MicroRNAs and Environmental Factors Based on a Semi-Supervised Classifier
- (2012) Xing Chen et al. PLoS One
- The polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type
- (2012) J. Jendrzejewski et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The hallmarks of cancer
- (2012) Tony Gutschner et al. RNA Biology
- The prostate cancer-up-regulated long noncoding RNA PlncRNA-1 modulates apoptosis and proliferation through reciprocal regulation of androgen receptor
- (2012) Zilian Cui et al. UROLOGIC ONCOLOGY-SEMINARS AND ORIGINAL INVESTIGATIONS
- Overexpression of Long Non-coding RNA HOTAIR Predicts Tumor Recurrence in Hepatocellular Carcinoma Patients Following Liver Transplantation
- (2011) Zhe Yang et al. ANNALS OF SURGICAL ONCOLOGY
- Molecular Genetics of Colorectal Cancer
- (2011) Eric R. Fearon Annual Review of Pathology-Mechanisms of Disease
- The relationship between Prostate CAncer gene 3 (PCA3) and prostate cancer significance
- (2011) Hein van Poppel et al. BJU INTERNATIONAL
- Global cancer statistics
- (2011) Ahmedin Jemal et al. CA-A CANCER JOURNAL FOR CLINICIANS
- Long Noncoding RNA HOTAIR Regulates Polycomb-Dependent Chromatin Modification and Is Associated with Poor Prognosis in Colorectal Cancers
- (2011) R. Kogo et al. CANCER RESEARCH
- Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
- (2011) M. N. Cabili et al. GENES & DEVELOPMENT
- Negative Correlation between Expression Level and Evolutionary Rate of Long Intergenic Noncoding RNAs
- (2011) David Managadze et al. Genome Biology and Evolution
- Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
- (2011) A. Pauli et al. GENOME RESEARCH
- The functional role of long non-coding RNA in human carcinomas
- (2011) Ewan A Gibb et al. Molecular Cancer
- Prioritizing Candidate Disease miRNAs by Topological Features in the miRNA Target-Dysregulated Network: Case Study of Prostate Cancer
- (2011) J. Xu et al. MOLECULAR CANCER THERAPEUTICS
- Molecular Mechanisms of Long Noncoding RNAs
- (2011) Kevin C. Wang et al. MOLECULAR CELL
- Non-coding RNAs in human disease
- (2011) Manel Esteller NATURE REVIEWS GENETICS
- Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network
- (2011) Qi Liao et al. NUCLEIC ACIDS RESEARCH
- NONCODE v3.0: integrative annotation of long noncoding RNAs
- (2011) D. Bu et al. NUCLEIC ACIDS RESEARCH
- Functional Characterization of the Plasmacytoma Variant Translocation 1 Gene (PVT1) in Diabetic Nephropathy
- (2011) M. Lucrecia Alvarez et al. PLoS One
- Human Cancer Long Non-Coding RNA Transcriptomes
- (2011) Ewan A. Gibb et al. PLoS One
- Long noncoding RNAs and human disease
- (2011) Orly Wapinski et al. TRENDS IN CELL BIOLOGY
- The Emergence of lncRNAs in Cancer Biology
- (2011) J. R. Prensner et al. Cancer Discovery
- Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases
- (2010) Dong Wang et al. BIOINFORMATICS
- Long non-coding RNAs in nervous system function and disease
- (2010) Irfan A. Qureshi et al. BRAIN RESEARCH
- Cancer Statistics, 2010
- (2010) A. Jemal et al. CA-A CANCER JOURNAL FOR CLINICIANS
- Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility
- (2010) Suyoun Chung et al. CANCER SCIENCE
- ANRIL, a long, noncoding RNA, is an unexpected major hotspot in GWAS
- (2010) Eric Pasmant et al. FASEB JOURNAL
- Mining Affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers
- (2010) Sharon K. Michelhaugh et al. JOURNAL OF NEUROCHEMISTRY
- Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
- (2010) Rajnish A. Gupta et al. NATURE
- Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
- (2010) Mitchell Guttman et al. NATURE BIOTECHNOLOGY
- lncRNAdb: a reference database for long noncoding RNAs
- (2010) Paulo P. Amaral et al. NUCLEIC ACIDS RESEARCH
- CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer
- (2010) Jiayi Wang et al. NUCLEIC ACIDS RESEARCH
- A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster
- (2009) X. Zhang et al. BLOOD
- A transcriptional sketch of a primary human breast cancer by 454 deep sequencing
- (2009) Alessandro Guffanti et al. BMC GENOMICS
- Evolution and Functions of Long Noncoding RNAs
- (2009) Chris P. Ponting et al. CELL
- Long noncoding RNAs: functional surprises from the RNA world
- (2009) J. E. Wilusz et al. GENES & DEVELOPMENT
- Non-coding RNAs: regulators of disease
- (2009) Ryan J Taft et al. JOURNAL OF PATHOLOGY
- Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
- (2009) Mitchell Guttman et al. NATURE
- Long non-coding RNAs: insights into functions
- (2009) Tim R. Mercer et al. NATURE REVIEWS GENETICS
- Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
- (2009) Ahmad M. Khalil et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data
- (2009) Daniel Ramsköld et al. PLoS Computational Biology
- The Genetic Signatures of Noncoding RNAs
- (2009) John S. Mattick PLoS Genetics
- Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of β-secretase
- (2008) Mohammad Ali Faghihi et al. NATURE MEDICINE
- NRED: a database of long noncoding RNA expression
- (2008) Marcel E. Dinger et al. NUCLEIC ACIDS RESEARCH
- An Analysis of Human MicroRNA and Disease Associations
- (2008) Ming Lu et al. PLoS One
- Specific expression of long noncoding RNAs in the mouse brain
- (2008) T. R. Mercer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
- The enigmatic world of mRNA-like ncRNAs: Their role in human evolution and in human diseases
- (2008) Márta Széll et al. SEMINARS IN CANCER BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now