Predicting lncRNA-miRNA Interaction via Graph Convolution Auto-Encoder

Novel link prediction for large-scale miRNA-lncRNA interaction network in a bipartite graph

(2018) Zhi-An Huang et al.   BMC Medical Genomics

FMSM: a novel computational model for predicting potential miRNA biomarkers for various human diseases

(2018) Yiwen Sun et al.   BMC Systems Biology

Prediction of microbe–disease association from the integration of neighbor and graph with collaborative recommendation model

(2017) Yu-An Huang et al.   Journal of Translational Medicine

Role of the long non-coding RNA PVT1 in the dysregulation of the ceRNA-ceRNA network in human breast cancer

(2017) Federica Conte et al.   PLoS One

Improved protein-protein interactions prediction via weighted sparse representation model combining continuous wavelet descriptor and PseAA composition

(2016) Yu-An Huang et al.   BMC Systems Biology

microRNA target prediction programs predict many false positives

(2016) Natalia Pinzón et al.   GENOME RESEARCH

Integrated analysis of long non-coding RNA-associated ceRNA network reveals potential lncRNA biomarkers in human lung adenocarcinoma

(2016) Jing Sui et al.   INTERNATIONAL JOURNAL OF ONCOLOGY

Molecular graph convolutions: moving beyond fingerprints

(2016) Steven Kearnes et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Construction of reliable protein–protein interaction networks using weighted sparse representation based classifier with pseudo substitution matrix representation features

(2016) Yu-An Huang et al.   NEUROCOMPUTING

Accurate detection for a wide range of mutation and editing sites of microRNAs from small RNA high-throughput sequencing profiles

(2016) Yun Zheng et al.   NUCLEIC ACIDS RESEARCH

Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer

(2016) Zhou Du et al.   Nature Communications

Intron Lariat RNA Inhibits MicroRNA Biogenesis by Sequestering the Dicing Complex in Arabidopsis

(2016) Ziwei Li et al.   PLoS Genetics

Identification of microRNAs, phasiRNAs and Their Targets in Pineapple

(2016) Yun Zheng et al.   Tropical Plant Biology

Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer

(2015) Peng Wang et al.   NUCLEIC ACIDS RESEARCH

Revealing editing and SNPs of microRNAs in colon tissues by analyzing high-throughput sequencing profiles of small RNAs

(2014) Yun Zheng et al.   BMC GENOMICS

The multilayered complexity of ceRNA crosstalk and competition

(2014) Yvonne Tay et al.   NATURE

lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse

(2014) Jing Gong et al.   NUCLEIC ACIDS RESEARCH

Long non-coding RNAs: A new frontier in the study of human diseases

(2013) Xuefei Shi et al.   CANCER LETTERS

An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma

(2011) Pavel Sumazin et al.   CELL

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

NONCODE v3.0: integrative annotation of long noncoding RNAs

(2011) D. Bu et al.   NUCLEIC ACIDS RESEARCH

Long noncoding RNAs and human disease

(2011) Orly Wapinski et al.   TRENDS IN CELL BIOLOGY