Genomics of Evolutionary Novelty in Hybrids and Polyploids

Polyploidization‐driven differentiation of freezing tolerance in Solidago canadensis

(2020) Huan Lu et al.   PLANT CELL AND ENVIRONMENT

A helitron-induced RabGDIα variant causes quantitative recessive resistance to maize rough dwarf disease

(2020) Qingcai Liu et al.   Nature Communications

Metabolome and Transcriptome Analysis of Hexaploid Solidago canadensis Roots Reveals its Invasive Capacity Related to Polyploidy

(2020) Miao Wu et al.   Genes

Plant pangenomics: approaches, applications and advancements

(2020) Monica Furaste Danilevicz et al.   CURRENT OPINION IN PLANT BIOLOGY

Frequency, Origins, and Evolutionary Role of Chromosomal Inversions in Plants

(2020) Kaichi Huang et al.   Frontiers in Plant Science

Assessing the response of small RNA populations to allopolyploidy using resynthesized Brassica napus allotetraploids

(2019) Paulina Martinez Palacios et al.   MOLECULAR BIOLOGY AND EVOLUTION

Impact of polymorphic transposable elements on linkage disequilibrium along chromosomes

(2019) Rimjhim Roy Choudhury et al.   MOLECULAR ECOLOGY

Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila

(2019) Gabriel E. Rech et al.   PLoS Genetics

Transposable elements drive rapid phenotypic variation in Capsella rubella

(2019) Xiao-Min Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA methylation repatterning accompanying hybridization, whole genome doubling and homoeolog exchange in nascent segmental rice allotetraploids

(2019) Ning Li et al.   NEW PHYTOLOGIST

Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication

(2019) Nicholas L. Panchy et al.   BMC EVOLUTIONARY BIOLOGY

MicroRNAs and Their Regulatory Roles in Plant–Environment Interactions

(2019) Xianwei Song et al.   Annual Review of Plant Biology

Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa

(2019) Patrick Monnahan et al.   Nature Ecology & Evolution

Structural variants in 3000 rice genomes

(2019) Roven Rommel Fuentes et al.   GENOME RESEARCH

The genome sequence of segmental allotetraploid peanut Arachis hypogaea

(2019) David J. Bertioli et al.   NATURE GENETICS

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

(2019) Weijian Zhuang et al.   NATURE GENETICS

The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation

(2019) Hui Zhang et al.   NUCLEIC ACIDS RESEARCH

Transposition favors the generation of large effect mutations that may facilitate rapid adaption

(2019) Leandro Quadrana et al.   Nature Communications

Hybridization speeds adaptive evolution in an eight-year field experiment

(2019) Nora Mitchell et al.   Scientific Reports

Gene Expression Modularity Reveals Footprints of Polygenic Adaptation in Theobroma cacao

(2019) Tuomas Hämälä et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptive introgression as a driver of local adaptation to climate in European white oaks

(2019) Thibault Leroy et al.   NEW PHYTOLOGIST

Variation and inheritance of small RNAs in maize inbreds and F1 hybrids

(2019) Peter Alexander Crisp et al.   PLANT PHYSIOLOGY

Monitoring the interplay between transposable element families and DNA methylation in maize

(2019) Jaclyn M. Noshay et al.   PLoS Genetics

Analysis of small RNA changes in different Brassica napus synthetic allopolyploids

(2019) Yunxiao Wei et al.   PeerJ

Plant Noncoding RNAs: Hidden Players in Development and Stress Responses

(2019) Yu Yu et al.   Annual Review of Cell and Developmental Biology

Maize transposable elements contribute to long non-coding RNAs that are regulatory hubs for abiotic stress response

(2019) Yuanda Lv et al.   BMC GENOMICS

Three-dimensional chromosome organization in flowering plants

(2019) Stefan Grob   Briefings in Functional Genomics

Domestication of high-copy transposons underlays the wheat small RNA response to an obligate pathogen

(2019) Manuel Poretti et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic Contribution of Paleopolyploidy to Adaptive Evolution in Angiosperms

(2019) Shengdan Wu et al.   Molecular Plant

One thousand plant transcriptomes and the phylogenomics of green plants

(2019)   NATURE

Genome‐wide analysis of MIKC ‐type MADS ‐box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalization

(2019) Susanne Schilling et al.   NEW PHYTOLOGIST

Evolution of small RNA expression following hybridization and allopolyploidization: insights from Spartina species (Poaceae, Chloridoideae)

(2019) Armand Cavé-Radet et al.   PLANT MOLECULAR BIOLOGY

Genomic architecture and introgression shape a butterfly radiation

(2019) Nathaniel B. Edelman et al.   SCIENCE

Unraveling cis and trans regulatory evolution during cotton domestication

(2019) Ying Bao et al.   Nature Communications

Interspecific introgression mediates adaptation to whole genome duplication

(2019) Sarah Marburger et al.   Nature Communications

Eukaryote hybrid genomes

(2019) Anna Runemark et al.   PLoS Genetics

A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization

(2019) Abdul Kader Alabdullah et al.   Frontiers in Plant Science

Nuclear–Cytoplasmic Coevolution Analysis of RuBisCO in Synthesized Cucumis Allopolyploid

(2019) Yufei Zhai et al.   Genes

Relaxed purifying selection in autopolyploids drives transposable element over-accumulation which provides variants for local adaptation

(2019) Pierre Baduel et al.   Nature Communications

Impact of whole-genome duplication events on diversification rates in angiosperms

(2018) Jacob B. Landis et al.   AMERICAN JOURNAL OF BOTANY

New prospects in the detection and comparative analysis of hybridization in the tree of life

(2018) Ryan A. Folk et al.   AMERICAN JOURNAL OF BOTANY

When Two Rights Make a Wrong: The Evolutionary Genetics of Plant Hybrid Incompatibilities

(2018) Lila Fishman et al.   Annual Review of Plant Biology

Adaptive introgression: a plant perspective

(2018) Adriana Suarez-Gonzalez et al.   Biology Letters

The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation

(2018) Jonathan F Wendel et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Transposable elements: all mobile, all different, some stress responsive, some adaptive?

(2018) Sophie Lanciano et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Epigenetic perspectives on the evolution and domestication of polyploid plant and crops

(2018) Mingquan Ding et al.   CURRENT OPINION IN PLANT BIOLOGY

Gene networks and the evolution of plant morphology

(2018) Mainak Das Gupta et al.   CURRENT OPINION IN PLANT BIOLOGY

Plant Lineage-Specific Amplification of Transcription Factor Binding Motifs by Miniature Inverted-Repeat Transposable Elements (MITEs)

(2018) Jordi Morata et al.   Genome Biology and Evolution

Robustness of Transposable Element Regulation but No Genomic Shock Observed in Interspecific Arabidopsis Hybrids

(2018) Ulrike Göbel et al.   Genome Biology and Evolution

The Evolutionary Consequences of Transposon-Related Pericentromer Expansion in Melon

(2018) Jordi Morata et al.   Genome Biology and Evolution

Neutral Theory, Transposable Elements, and Eukaryotic Genome Evolution

(2018) Irina R Arkhipova   MOLECULAR BIOLOGY AND EVOLUTION

The impact of transposable elements in adaptive evolution

(2018) Lukas Schrader et al.   MOLECULAR ECOLOGY

Unstable Allotetraploid Tobacco Genome due to Frequent Homeologous Recombination, Segmental Deletion, and Chromosome Loss

(2018) Shumin Chen et al.   Molecular Plant

Dynamics and function of DNA methylation in plants

(2018) Huiming Zhang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The causes and consequences of subgenome dominance in hybrids and recent polyploids

(2018) Kevin A. Bird et al.   NEW PHYTOLOGIST

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus

(2018) Bhavna Hurgobin et al.   PLANT BIOTECHNOLOGY JOURNAL

Homoeolog Expression Is Modulated Differently by Different Subgenomes in Brassica napus Hybrids and Allotetraploids

(2018) Dawei Zhang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Improbable Big Birds

(2018) Catherine E. Wagner   SCIENCE

Natural selection interacts with recombination to shape the evolution of hybrid genomes

(2018) Molly Schumer et al.   SCIENCE

Gene Expression Dominance in Allopolyploids: Hypotheses and Models

(2018) Samuel Bottani et al.   TRENDS IN PLANT SCIENCE

A naturally occurring epiallele associates with leaf senescence and local climate adaptation in Arabidopsis accessions

(2018) Li He et al.   Nature Communications

Genome downsizing, physiological novelty, and the global dominance of flowering plants

(2018) Kevin A. Simonin et al.   PLOS BIOLOGY

Genome Size Diversity and Its Impact on the Evolution of Land Plants

(2018) et al.   Genes

Heterosis in plants

(2018) Frank Hochholdinger et al.   CURRENT BIOLOGY

Parental transposable element loads influence their dynamics in young Nicotiana hybrids and allotetraploids

(2018) Corinne Mhiri et al.   NEW PHYTOLOGIST

Gene Co-expression Network Analysis Suggests the Existence of Transcriptional Modules Containing a High Proportion of Transcriptionally Differentiated Homoeologs in Hexaploid Wheat

(2018) Kotaro Takahagi et al.   Frontiers in Plant Science

Transposable element insertions in fission yeast drive adaptation to environmental stress

(2018) Caroline Esnault et al.   GENOME RESEARCH

Polyploidy, the Nucleotype, and Novelty: The Impact of Genome Doubling on the Biology of the Cell

(2018) Jeff J. Doyle et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

The role of transposable elements in the evolution of aluminium resistance in plants

(2018) Jorge F Pereira et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cytonuclear Coevolution following Homoploid Hybrid Speciation in Aegilops tauschii

(2018) Changping Li et al.   MOLECULAR BIOLOGY AND EVOLUTION

ZmMADS69 functions as a flowering activator through the ZmRap2.7-ZCN8 regulatory module and contributes to maize flowering time adaptation

(2018) Yameng Liang et al.   NEW PHYTOLOGIST

Cis -trans controls and regulatory novelty accompanying allopolyploidization

(2018) Guanjing Hu et al.   NEW PHYTOLOGIST

The extent of adaptive wild introgression in crops

(2018) Garrett M. Janzen et al.   NEW PHYTOLOGIST

Polyploidy Affects Plant Growth and Alters Cell Wall Composition

(2018) Sander Corneillie et al.   PLANT PHYSIOLOGY

Connecting genome structural variation with complex traits in crop plants

(2018) Iulian Gabur et al.   THEORETICAL AND APPLIED GENETICS

Retrotranspositional landscape of Asian rice revealed by 3000 genomes

(2018) Marie-Christine Carpentier et al.   Nature Communications

Exploring the hybrid speciation continuum in birds

(2018) Jente Ottenburghs   Ecology and Evolution

LTR-retrotransposons in plants: Engines of evolution

(2017) Leonardo Galindo-González et al.   GENE

Evolutionary Conservation and Divergence of Gene Coexpression Networks inGossypium(Cotton) Seeds

(2017) Guanjing Hu et al.   Genome Biology and Evolution

Is homoploid hybrid speciation that rare? An empiricist’s view

(2017) G Nieto Feliner et al.   HEREDITY

Hybrids and horizontal transfer: introgression allows adaptive allele discovery

(2017) Roswitha Schmickl et al.   JOURNAL OF EXPERIMENTAL BOTANY

Segmental allotetraploidy generates extensive homoeologous expression rewiring and phenotypic diversity at the population level in rice

(2017) Yue Sun et al.   MOLECULAR ECOLOGY

Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae)

(2017) Nicolás García et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The genome of Chenopodium quinoa

(2017) David E. Jarvis et al.   NATURE

The evolutionary significance of polyploidy

(2017) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

Introgression from Populus balsamifera underlies adaptively significant variation and range boundaries in P. trichocarpa

(2017) Adriana Suarez-Gonzalez et al.   NEW PHYTOLOGIST

Gene co-expression network reconstruction: a review on computational methods for inferring functional information from plant-based expression data

(2017) Abbasali Emamjomeh et al.   Plant Biotechnology Reports

Coordinated Functional Divergence of Genes after Genome Duplication inArabidopsis thaliana

(2017) Riet De Smet et al.   PLANT CELL

Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower

(2017) Patrick P. Edger et al.   PLANT CELL

Population-genomic inference of the strength and timing of selection against gene flow

(2017) Simon Aeschbacher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wild tobacco genomes reveal the evolution of nicotine biosynthesis

(2017) Shuqing Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ZmCCT9enhances maize adaptation to higher latitudes

(2017) Cheng Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic islands of divergence or opportunities for introgression?

(2017) Rachael A. Bay et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Watching speciation in action

(2017) B. Rosemary Grant et al.   SCIENCE

Rapid hybrid speciation in Darwin’s finches

(2017) Sangeet Lamichhaney et al.   SCIENCE

A three-genome five-gene comprehensive phylogeny of the bulbous genus Narcissus (Amaryllidaceae) challenges current classifications and reveals multiple hybridization events

(2017) Isabel Marques et al.   TAXON

Beyond Genomics: Studying Evolution with Gene Coexpression Networks

(2017) Colin Ruprecht et al.   TRENDS IN PLANT SCIENCE

Small RNAs: Big Impact on Plant Development

(2017) Marco D’Ario et al.   TRENDS IN PLANT SCIENCE

Plant speciation across environmental gradients and the occurrence and nature of hybrid zones

(2017) Richard J. Abbott   Journal of Systematics and Evolution

Ancient hybridization fuels rapid cichlid fish adaptive radiations

(2017) Joana I. Meier et al.   Nature Communications

Revisiting ancestral polyploidy in plants

(2017) Colin Ruprecht et al.   Science Advances

The genomic mosaicism of hybrid speciation

(2017) Tore O. Elgvin et al.   Science Advances

Transposable element evolution in the allotetraploid Capsella bursa-pastoris

(2016) J. Arvid Ågren et al.   AMERICAN JOURNAL OF BOTANY

Polyploidy: Pitfalls and paths to a paradigm

(2016) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

(2016) Ophélie Jouffroy et al.   BMC GENOMICS

Of dups and dinos: evolution at the K/Pg boundary

(2016) Rolf Lohaus et al.   CURRENT OPINION IN PLANT BIOLOGY

Unidirectional diploid-tetraploid introgression among British birch trees with shifting ranges shown by restriction site-associated markers

(2016) Jasmin Zohren et al.   MOLECULAR ECOLOGY

A genomic perspective on hybridization and speciation

(2016) Bret A. Payseur et al.   MOLECULAR ECOLOGY

Genomic and functional approaches reveal a case of adaptive introgression fromPopulus balsamifera(balsam poplar) inP. trichocarpa(black cottonwood)

(2016) Adriana Suarez-Gonzalez et al.   MOLECULAR ECOLOGY

Genomics of hybridization and its evolutionary consequences

(2016) Richard J. Abbott et al.   MOLECULAR ECOLOGY

Ancient hybridization and genomic stabilization in a swordtail fish

(2016) Molly Schumer et al.   MOLECULAR ECOLOGY

Selection against recombinant hybrids maintains reproductive isolation in hybridizingPopulusspecies despite F1fertility and recurrent gene flow

(2016) Camille Christe et al.   MOLECULAR ECOLOGY

The industrial melanism mutation in British peppered moths is a transposable element

(2016) Arjen E. van’t Hof et al.   NATURE

Regulatory activities of transposable elements: from conflicts to benefits

(2016) Edward B. Chuong et al.   NATURE REVIEWS GENETICS

Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes

(2016) Nathan M. Springer et al.   PLANT CELL

Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms

(2016) Zhen Li et al.   PLANT CELL

Evolution of gene duplication in plants

(2016) Nicholas Panchy et al.   PLANT PHYSIOLOGY

FamNet: A framework to identify multiplied modules driving pathway diversification in plants.

(2016) Colin Ruprecht et al.   PLANT PHYSIOLOGY

Cytonuclear interactions affect adaptive traits of the annual plantArabidopsis thalianain the field

(2016) Fabrice Roux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selfish evolution of cytonuclear hybrid incompatibility inMimulus

(2016) Andrea L. Case et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A shortcut to a species

(2016) Elizabeth Pennisi   SCIENCE

Evolution of Plant Phenotypes, from Genomes to Traits

(2016) Josep M. Casacuberta et al.   G3-Genes Genomes Genetics

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation

(2016) James B. Pease et al.   PLOS BIOLOGY

Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence

(2016) Camille Roux et al.   PLOS BIOLOGY

Learning from Co-expression Networks: Possibilities and Challenges

(2016) Elise A. R. Serin et al.   Frontiers in Plant Science

Speciation driven by hybridization and chromosomal plasticity in a wild yeast

(2016) Jean-Baptiste Leducq et al.   Nature Microbiology

The wondrous cycles of polyploidy in plants

(2015) Jonathan F. Wendel   AMERICAN JOURNAL OF BOTANY

Genetic assimilation: a review of its potential proximate causes and evolutionary consequences

(2015) Ian M. Ehrenreich et al.   ANNALS OF BOTANY

Adaptive introgression as a resource for management and genetic conservation in a changing climate

(2015) Jill A. Hamilton et al.   CONSERVATION BIOLOGY

Polyploidy and genome evolution in plants

(2015) Pamela S Soltis et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

The two-speed genomes of filamentous pathogens: waltz with plants

(2015) Suomeng Dong et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Epigenetic and developmental regulation in plant polyploids

(2015) Qingxin Song et al.   CURRENT OPINION IN PLANT BIOLOGY

Maintenance and Loss of Duplicated Genes by Dosage Subfunctionalization

(2015) Jean-Francois Gout et al.   MOLECULAR BIOLOGY AND EVOLUTION

Copy number variation at the GL7 locus contributes to grain size diversity in rice

(2015) Yuexing Wang et al.   NATURE GENETICS

Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications

(2015) David C. Tank et al.   NEW PHYTOLOGIST

A new approach for annotation of transposable elements using small RNA mapping

(2015) Moaine El Baidouri et al.   NUCLEIC ACIDS RESEARCH

microRNA evolution and expression analysis in polyploidized cotton genome

(2015) Fuliang Xie et al.   PLANT BIOTECHNOLOGY JOURNAL

Towards plant pangenomics

(2015) Agnieszka A. Golicz et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber

(2015) Zhonghua Zhang et al.   PLANT CELL

Centromeric chromatin and its dynamics in plants

(2015) Inna Lermontova et al.   PLANT JOURNAL

Evolutionary dynamics of retrotransposons following autopolyploidy in the Buckler Mustard species complex

(2015) Amélie Bardil et al.   PLANT JOURNAL

The butterfly plant arms-race escalated by gene and genome duplications

(2015) Patrick P. Edger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cytonuclear Coordination Is Not Immediate upon Allopolyploid Formation in Tragopogon miscellus (Asteraceae) Allopolyploids

(2015) Tina Sehrish et al.   PLoS One

Is gene flow the most important evolutionary force in plants?

(2014) Norman C. Ellstrand   AMERICAN JOURNAL OF BOTANY

The role of homoploid hybridization in evolution: A century of studies synthesizing genetics and ecology

(2014) S. B. Yakimowski et al.   AMERICAN JOURNAL OF BOTANY

Nonadditive Gene Expression in Polyploids

(2014) Mi-Jeong Yoo et al.   Annual Review of Genetics

Structural variations in plant genomes

(2014) R. K. Saxena et al.   Briefings in Functional Genomics

HOW COMMON IS HOMOPLOID HYBRID SPECIATION?

(2014) Molly Schumer et al.   EVOLUTION

Cytonuclear Evolution of Rubisco in Four Allopolyploid Lineages

(2014) Lei Gong et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-Wide Disruption of Gene Expression in Allopolyploids but Not Hybrids of Rice Subspecies

(2014) Chunming Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

On the adaptive value of cytoplasmic genomes in plants

(2014) Dan G. Bock et al.   MOLECULAR ECOLOGY

Genomics and the origin of species

(2014) Ole Seehausen et al.   NATURE REVIEWS GENETICS

Contrasting evolutionary trajectories of multiple retrotransposons following independent allopolyploidy in wild wheats

(2014) Natacha Senerchia et al.   NEW PHYTOLOGIST

Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayroseet al. (2011)

(2014) Douglas E. Soltis et al.   NEW PHYTOLOGIST

Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution

(2014) Kevin Vanneste et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Polyploidy and novelty: Gottlieb's legacy

(2014) Pamela S. Soltis et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat

(2014) A. Li et al.   PLANT CELL

Extensive introgression in a malaria vector species complex revealed by phylogenomics

(2014) M. C. Fontaine et al.   SCIENCE

Genome interplay in the grain transcriptome of hexaploid bread wheat

(2014) M. Pfeifer et al.   SCIENCE

DNA methylation as a system of plant genomic immunity

(2014) M. Yvonne Kim et al.   TRENDS IN PLANT SCIENCE

Transposable element islands facilitate adaptation to novel environments in an invasive species

(2014) Lukas Schrader et al.   Nature Communications

miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development

(2014) Xueying Guan et al.   Nature Communications

Gene duplication as a driver of plant morphogenetic evolution

(2013) Stefan A Rensing   CURRENT OPINION IN PLANT BIOLOGY

The Standing Pool of Genomic Structural Variation in a Natural Population of Mimulus guttatus

(2013) Lex E. Flagel et al.   Genome Biology and Evolution

Does hybridization influence speciation?

(2013) N. H. Barton   JOURNAL OF EVOLUTIONARY BIOLOGY

Pulling together or pulling apart: hybridization in theory and practice

(2013) R. K. Butlin et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybridization is important in evolution, but is speciation?

(2013) G.-P. Saetre   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybridization, speciation and novelty

(2013) P. S. Soltis   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybridization may rarely promote speciation

(2013) M. R. Servedio et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The genomic consequences of adaptive divergence and reproductive isolation between species of manakins

(2013) T. L. Parchman et al.   MOLECULAR ECOLOGY

Architecture and evolution of a minute plant genome

(2013) Enrique Ibarra-Laclette et al.   NATURE

Allopolyploidy has a moderate impact on restructuring at three contrasting transposable element insertion sites in resynthesizedBrassica napusallotetraploids

(2013) Véronique Sarilar et al.   NEW PHYTOLOGIST

Reinforcement in plants

(2013) Robin Hopkins   NEW PHYTOLOGIST

Transcriptional Activity, Chromosomal Distribution and Expression Effects of Transposable Elements in Coffea Genomes

(2013) Fabrício R. Lopes et al.   PLoS One

Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants

(2013) R. De Smet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Variation of presence/absence genes among Arabidopsis populations

(2012) Shengjun Tan et al.   BMC EVOLUTIONARY BIOLOGY

Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model

(2012) M Eric Schranz et al.   CURRENT OPINION IN PLANT BIOLOGY

Epigenetic responses to stress: triple defense?

(2012) Ruben Gutzat et al.   CURRENT OPINION IN PLANT BIOLOGY

Developmental relaxation of transposable element silencing in plants: functional or byproduct?

(2012) Germán Martínez et al.   CURRENT OPINION IN PLANT BIOLOGY

Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility

(2012) Danny W-K Ng et al.   CURRENT OPINION IN PLANT BIOLOGY

The Cytonuclear Dimension of Allopolyploid Evolution: An Example from Cotton Using Rubisco

(2012) L. Gong et al.   MOLECULAR BIOLOGY AND EVOLUTION

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

(2012) Kanchon K. Dasmahapatra et al.   NATURE

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

Sub- and neo-functionalization ofAPETALA3paralogs have contributed to the evolution of novel floral organ identity inAquilegia(columbine, Ranunculaceae)

(2012) Bharti Sharma et al.   NEW PHYTOLOGIST

Homoeolog expression bias and expression level dominance in allopolyploids

(2012) C. E. Grover et al.   NEW PHYTOLOGIST

Mobilization of Stowaway-like MITEs in newly formed allohexaploid wheat species

(2012) Beery Yaakov et al.   PLANT MOLECULAR BIOLOGY

Coalescent Simulations Reveal Hybridization and Incomplete Lineage Sorting in Mediterranean Linaria

(2012) José Luis Blanco-Pastor et al.   PLoS One

Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae)

(2012) M. Chester et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introgression of wing pattern alleles and speciation via homoploid hybridization in Heliconius butterflies: a review of evidence from the genome

(2012) A. V. Z. Brower   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Papaver somniferum 10-Gene Cluster for Synthesis of the Anticancer Alkaloid Noscapine

(2012) T. Winzer et al.   SCIENCE

Transposable element small RNAs as regulators of gene expression

(2012) Andrea D. McCue et al.   TRENDS IN GENETICS

Epigenetic neofunctionalisation and regulatory gene evolution in grasses

(2012) Hugh Dickinson et al.   TRENDS IN PLANT SCIENCE

Next-generation hybridization and introgression

(2011) A D Twyford et al.   HEREDITY

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat

(2011) Z. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recently Formed Polyploid Plants Diversify at Lower Rates

(2011) I. Mayrose et al.   SCIENCE

Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies

(2010) Kateřina Ambrožová et al.   ANNALS OF BOTANY

Transpositional reactivation of the Dart transposon family in rice lines derived from introgressive hybridization with Zizania latifolia

(2010) Ningning Wang et al.   BMC PLANT BIOLOGY

Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

(2010) R. A. Swanson-Wagner et al.   GENOME RESEARCH

Different scales of Ty1/copia-like retrotransposon proliferation in the genomes of three diploid hybrid sunflower species

(2010) T Kawakami et al.   HEREDITY

Dramatic Change in Function and Expression Pattern of a Gene Duplicated by Polyploidy Created a Paternal Effect Gene in the Brassicaceae

(2010) S.-L. Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome scan of hybridizing sunflowers from Texas (Helianthus annuusandH. debilis) reveals asymmetric patterns of introgression and small islands of genomic differentiation

(2010) M. SCASCITELLI et al.   MOLECULAR ECOLOGY

Mobilization of retrotransposons in synthetic allotetraploid tobacco

(2010) M. Petit et al.   NEW PHYTOLOGIST

Adaptive introgression of abiotic tolerance traits in the sunflower Helianthus annuus

(2010) Kenneth D. Whitney et al.   NEW PHYTOLOGIST

Heterosis

(2010) J. A. Birchler et al.   PLANT CELL

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Genetic Evidence for Hybrid Trait Speciation in Heliconius Butterflies

(2010) Camilo Salazar et al.   PLoS Genetics

Asymmetric Introgressive Hybridization Among Louisiana Iris Species

(2010) Michael Arnold et al.   Genes

A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting

(2009) Simon Joly et al.   AMERICAN NATURALIST

The Role of Hybridization in Plant Speciation

(2009) Pamela S. Soltis et al.   Annual Review of Plant Biology

Gene duplication and evolutionary novelty in plants

(2009) Lex E. Flagel et al.   NEW PHYTOLOGIST

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

(2009) J. S. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The secondary contact phase of allopatric speciation in Darwin's finches

(2009) P. R. Grant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary Genetics of Genome Merger and Doubling in Plants

(2008) Jeff J. Doyle et al.   Annual Review of Genetics

Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution

(2008) Lex Flagel et al.   BMC BIOLOGY

Homoploid hybrid speciation in animals

(2008) JESÚS MAVÁREZ et al.   MOLECULAR ECOLOGY

Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids

(2008) Zhongfu Ni et al.   NATURE

Turning a hobby into a job: How duplicated genes find new functions

(2008) Gavin C. Conant et al.   NATURE REVIEWS GENETICS

Regulatory Genes Control a Key Morphological and Ecological Trait Transferred Between Species

(2008) M. Kim et al.   SCIENCE