Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila
出版年份 2019 全文链接
标题
Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila
作者
关键词
Invertebrate genomics, Drosophila melanogaster, Alcohols, Gene ontologies, Chi square tests, Evolutionary adaptation, Gene expression, Genome analysis
出版物
PLoS Genetics
Volume 15, Issue 2, Pages e1007900
出版商
Public Library of Science (PLoS)
发表日期
2019-02-13
DOI
10.1371/journal.pgen.1007900
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- The search for loci under selection: trends, biases and progress
- (2018) Collin W. Ahrens et al. MOLECULAR ECOLOGY
- Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations
- (2018) Lidia Mateo et al. Scientific Reports
- Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster
- (2018) Sara Guirao-Rico et al. Current Opinion in Insect Science
- Is diapause an ancient adaptation in Drosophila ?
- (2017) Valeria Zonato et al. JOURNAL OF INSECT PHYSIOLOGY
- Hidden genetic variation shapes the structure of functional elements in Drosophila
- (2017) Mahul Chakraborty et al. NATURE GENETICS
- McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data
- (2017) Michael G. Nelson et al. G3-Genes Genomes Genetics
- Natural and laboratory mutations in kuzbanian are associated with zinc stress phenotypes in Drosophila melanogaster
- (2017) Hung Le Manh et al. Scientific Reports
- Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions
- (2016) Sean Hoban et al. AMERICAN NATURALIST
- Human adaptation and evolution by segmental duplication
- (2016) Megan Y Dennis et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Genomic Evidence for Adaptive Inversion Clines inDrosophila melanogaster
- (2016) Martin Kapun et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Thousand Fly Genomes: An ExpandedDrosophilaGenome Nexus
- (2016) Justin B. Lack et al. MOLECULAR BIOLOGY AND EVOLUTION
- Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation inDrosophila melanogaster
- (2016) Alan O. Bergland et al. MOLECULAR ECOLOGY
- Controlling false discoveries in genome scans for selection
- (2016) Olivier François et al. MOLECULAR ECOLOGY
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- FlyBase at 25: looking to the future
- (2016) L. Sian Gramates et al. NUCLEIC ACIDS RESEARCH
- Retrotransposons as regulators of gene expression
- (2016) R. A. Elbarbary et al. SCIENCE
- Regulatory evolution of innate immunity through co-option of endogenous retroviruses
- (2016) E. B. Chuong et al. SCIENCE
- Going global by adapting local: A review of recent human adaptation
- (2016) S. Fan et al. SCIENCE
- Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila
- (2016) Miriam Merenciano et al. PLoS Genetics
- The Arabidopsis thaliana mobilome and its impact at the species level
- (2016) Leandro Quadrana et al. eLife
- Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation
- (2016) Tim Stuart et al. eLife
- Indy gene variation in natural populations confers fitness advantage and life span extension through transposon insertion
- (2016) Chen-Tseh Zhu et al. Aging-US
- The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population
- (2015) Justin B. Lack et al. GENETICS
- Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates
- (2015) M. Gautier GENETICS
- The Release 6 reference sequence of theDrosophila melanogastergenome
- (2015) Roger A. Hoskins et al. GENOME RESEARCH
- Adaptive Evolution Is Substantially Impeded by Hill–Robertson Interference inDrosophila
- (2015) David Castellano et al. MOLECULAR BIOLOGY AND EVOLUTION
- Exploring the Phenotypic Space and the Evolutionary History of a Natural Mutation inDrosophila melanogaster
- (2015) Anna Ullastres et al. MOLECULAR BIOLOGY AND EVOLUTION
- Unique transposon landscapes are pervasive acrossDrosophila melanogastergenomes
- (2015) Reazur Rahman et al. NUCLEIC ACIDS RESEARCH
- FlyBase: establishing a Gene Group resource forDrosophila melanogaster
- (2015) Helen Attrill et al. NUCLEIC ACIDS RESEARCH
- Genetic basis of transcriptome diversity inDrosophila melanogaster
- (2015) Wen Huang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Towards the identification of the loci of adaptive evolution
- (2015) Carolina Pardo-Diaz et al. Methods in Ecology and Evolution
- LEA: AnRpackage for landscape and ecological association studies
- (2015) Eric Frichot et al. Methods in Ecology and Evolution
- Global Diversity Lines–A Five-Continent Reference Panel of Sequenced Drosophila melanogaster Strains
- (2015) Jennifer K. Grenier et al. G3-Genes Genomes Genetics
- Recent Selective Sweeps in North American Drosophila melanogaster Show Signatures of Soft Sweeps
- (2015) Nandita R. Garud et al. PLoS Genetics
- The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population
- (2015) Justin B. Lack et al. GENETICS
- Population Genomics of Transposable Elements inDrosophila
- (2014) Maite G. Barrón et al. Annual Review of Genetics
- Conservation in first introns is positively associated with the number of exons within genes and the presence of regulatory epigenetic signals
- (2014) Seung Park et al. BMC GENOMICS
- Adaptations to local environments in modern human populations
- (2014) Choongwon Jeong et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Gene Expression Variation in Drosophila melanogaster Due to Rare Transposable Element Insertion Alleles of Large Effect
- (2014) J. M. Cridland et al. GENETICS
- Resources for Functional Genomics Studies in Drosophila melanogaster
- (2014) Stephanie E. Mohr et al. GENETICS
- Parallel Geographic Variation in Drosophila melanogaster
- (2014) Josie A. Reinhardt et al. GENETICS
- Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines
- (2014) W. Huang et al. GENOME RESEARCH
- On Detecting Incomplete Soft or Hard Selective Sweeps Using Haplotype Structure
- (2014) Anna Ferrer-Admetlla et al. MOLECULAR BIOLOGY AND EVOLUTION
- selscan: An Efficient Multithreaded Program to Perform EHH-Based Scans for Positive Selection
- (2014) Z. A. Szpiech et al. MOLECULAR BIOLOGY AND EVOLUTION
- The transposable elementBari-Jhehmediates oxidative stress response in Drosophila
- (2014) Lain Guio et al. MOLECULAR ECOLOGY
- T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data
- (2014) Anna-Sophie Fiston-Lavier et al. NUCLEIC ACIDS RESEARCH
- PASTEC: An Automatic Transposable Element Classification Tool
- (2014) Claire Hoede et al. PLoS One
- Linkage disequilibrium and signatures of positive selection around LINE-1 retrotransposons in the human genome
- (2014) A. Kuhn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Transposable Element Insertion Confers Xenobiotic Resistance in Drosophila
- (2014) Lidia Mateo et al. PLoS Genetics
- Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila
- (2014) Alan O. Bergland et al. PLoS Genetics
- An Age-of-Allele Test of Neutrality for Transposable Element Insertions
- (2013) J. P. Blumenstiel et al. GENETICS
- Whole-genome sequencing of two North AmericanDrosophila melanogasterpopulations reveals genetic differentiation and positive selection
- (2013) D. Campo et al. MOLECULAR ECOLOGY
- The impact of transposable elements in environmental adaptation
- (2013) Elena Casacuberta et al. MOLECULAR ECOLOGY
- A Genome-Wide, Fine-Scale Map of Natural Pigmentation Variation in Drosophila melanogaster
- (2013) Héloïse Bastide et al. PLoS Genetics
- Using the Köppen classification to quantify climate variation and change: An example for 1901–2010
- (2013) Deliang Chen et al. Environmental Development
- Matrix eQTL: ultra fast eQTL analysis via large matrix operations
- (2012) A. A. Shabalin BIOINFORMATICS
- Genome-wide patterns of latitudinal differentiation among populations ofDrosophila melanogasterfrom North America
- (2012) Daniel K. Fabian et al. MOLECULAR ECOLOGY
- The Drosophila melanogaster Genetic Reference Panel
- (2012) Trudy F. C. Mackay et al. NATURE
- Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster
- (2012) Robert Kofler et al. PLoS Genetics
- The Many Landscapes of Recombination in Drosophila melanogaster
- (2012) Josep M. Comeron et al. PLoS Genetics
- Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture
- (2012) John E. Pool et al. PLoS Genetics
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- The struggle for life of the genome's selfish architects
- (2011) Aurélie Hua-Van et al. Biology Direct
- A linear complexity phasing method for thousands of genomes
- (2011) Olivier Delaneau et al. NATURE METHODS
- Considering Transposable Element Diversification in De Novo Annotation Approaches
- (2011) Timothée Flutre et al. PLoS One
- Heterozygote advantage as a natural consequence of adaptation in diploids
- (2011) D. Sellis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell
- (2010) T. Junier et al. BIOINFORMATICS
- Drosophila melanogaster recombination rate calculator
- (2010) Anna-Sophie Fiston-Lavier et al. GENE
- Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster
- (2010) B. Kolaczkowski et al. GENETICS
- Using Environmental Correlations to Identify Loci Underlying Local Adaptation
- (2010) G. Coop et al. GENETICS
- On the Utility of Short Intron Sequences as a Reference for the Detection of Positive and Negative Selection in Drosophila
- (2010) J. Parsch et al. MOLECULAR BIOLOGY AND EVOLUTION
- Population Genomics of Transposable Elements in Drosophila melanogaster
- (2010) D. A. Petrov et al. MOLECULAR BIOLOGY AND EVOLUTION
- Adaptation – not by sweeps alone
- (2010) Jonathan K. Pritchard et al. NATURE REVIEWS GENETICS
- Mutations and quantitative genetic variation: lessons from Drosophila
- (2010) T. F. C. Mackay PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genome-Wide Patterns of Adaptation to Temperate Environments Associated with Transposable Elements in Drosophila
- (2010) Josefa González et al. PLoS Genetics
- Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus
- (2010) Joshua M. Schmidt et al. PLoS Genetics
- A Recent Adaptive Transposable Element Insertion Near Highly Conserved Developmental Loci in Drosophila melanogaster
- (2009) J. Gonzalez et al. MOLECULAR BIOLOGY AND EVOLUTION
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
- High Rate of Recent Transposable Element–Induced Adaptation in Drosophila melanogaster
- (2008) Josefa González et al. PLOS BIOLOGY
- Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes
- (2008) Hsiao-Pei Yang et al. GENOME BIOLOGY
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