Genome‐wide analysis of MIKC ‐type MADS ‐box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalization

Evolutionary origins of pseudogenes and their association with regulatory sequences in plants

(2019) Jianbo Xie et al.   PLANT CELL

How can developmental biology help feed a growing population?

(2019) Scott A. Boden et al.   DEVELOPMENT

Durum wheat genome highlights past domestication signatures and future improvement targets

(2019) Marco Maccaferri et al.   NATURE GENETICS

Wheat VRN1, FUL2 and FUL3 play critical and redundant roles in spikelet development and spike determinacy

(2019) Chengxia Li et al.   DEVELOPMENT

MADS-box family genes in sheepgrass and their involvement in abiotic stress responses

(2018) Junting Jia et al.   BMC PLANT BIOLOGY

Transposons: a blessing curse

(2018) Manu J Dubin et al.   CURRENT OPINION IN PLANT BIOLOGY

MADS-box genes and crop domestication: the jack of all traits

(2018) Susanne Schilling et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide analysis of the MADS-box gene family in polyploid cotton ( Gossypium hirsutum ) and in its diploid parental species ( Gossypium arboreum and Gossypium raimondii )

(2018) Sarah Muniz Nardeli et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Array of MADS-Box Genes: Facilitator for Rapid Adaptation?

(2018) Günter Theißen et al.   TRENDS IN PLANT SCIENCE

Genome-Wide Identification and Characterization of MADS-box Family Genes Related to Floral Organ Development and Stress Resistance in Hevea brasiliensis Müll. Arg.

(2018) Mingming Wei et al.   Forests

Genome sequence of the progenitor of wheat A subgenome Triticum urartu

(2018) Hong-Qing Ling et al.   NATURE

Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes

(2018) Silong Sun et al.   NATURE GENETICS

Shifting the limits in wheat research and breeding using a fully annotated reference genome

(2018) et al.   SCIENCE

The transcriptional landscape of polyploid wheat

(2018) R. H. Ramírez-González et al.   SCIENCE

Common Bean Subtelomeres Are Hot Spots of Recombination and Favor Resistance Gene Evolution

(2018) Nicolas W. G. Chen et al.   Frontiers in Plant Science

A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci

(2018) Kaitlin U. Laverty et al.   GENOME RESEARCH

Exploring and exploiting pan-genomics for crop improvement

(2018) Yongfu Tao et al.   Molecular Plant

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA–mediated regulatory pathway and ROS scavenging

(2018) Ning Xu et al.   PLoS Genetics

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

(2017) Bernardo J. Clavijo et al.   GENOME RESEARCH

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

(2017) Ming-Cheng Luo et al.   NATURE

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Geographic mosaics and changing rates of cereal domestication

(2017) Robin G. Allaby et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation

(2017) Tao Zhao et al.   PLANT CELL

The pangenome of hexaploid bread wheat

(2017) Juan D. Montenegro et al.   PLANT JOURNAL

Understanding and Manipulating Meiotic Recombination in Plants

(2017) Christophe Lambing et al.   PLANT PHYSIOLOGY

Genome-wide identification and analysis of the MADS-box gene family in bread wheat (Triticum aestivum L.)

(2017) Jian Ma et al.   PLoS One

Uncovering hidden variation in polyploid wheat

(2017) Ksenia V. Krasileva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication

(2017) Raz Avni et al.   SCIENCE

Efficient DNA-free genome editing of bread wheat using CRISPR/Cas9 ribonucleoprotein complexes

(2017) Zhen Liang et al.   Nature Communications

Effect of VRN1 and PPD1 genes on anthesis date and wheat growth

(2017) F. A. J. Harris et al.   Crop & Pasture Science

Genome-Wide Sequence and Expression Analysis of the NAC Transcription Factor Family in Polyploid Wheat

(2017) Philippa Borrill et al.   G3-Genes Genomes Genetics

Cloning and Functional Analysis of MADS-box Genes, TaAG-A and TaAG-B, from a Wheat K-type Cytoplasmic Male Sterile Line

(2017) Wenlong Yang et al.   Frontiers in Plant Science

Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening

(2017) Juhua Liu et al.   Scientific Reports

The host-pathogen interaction between wheat and yellow rust induces temporally coordinated waves of gene expression

(2016) Albor Dobon et al.   BMC GENOMICS

Superheroes and masterminds of plant domestication

(2016) Natalia E. Martínez-Ainsworth et al.   COMPTES RENDUS BIOLOGIES

MADS-domain transcription factors and the floral quartet model of flower development: linking plant development and evolution

(2016) Günter Theißen et al.   DEVELOPMENT

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

A Flowering Locus C Homolog Is a Vernalization-Regulated Repressor in Brachypodium and Is Cold Regulated in Wheat

(2016) Neha Sharma et al.   PLANT PHYSIOLOGY

expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform

(2016) Philippa Borrill et al.   PLANT PHYSIOLOGY

Suppressed recombination and unique candidate genes in the divergent haplotype encoding Fhb1, a major Fusarium head blight resistance locus in wheat

(2016) W. Schweiger et al.   THEORETICAL AND APPLIED GENETICS

Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.)

(2015) Zhenshan Liu et al.   BMC PLANT BIOLOGY

Phylogenomics reveals surprising sets of essential and dispensable clades of MIKCc-group MADS-box genes in flowering plants

(2015) Lydia Gramzow et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Genomics as the key to unlocking the polyploid potential of wheat

(2015) Philippa Borrill et al.   NEW PHYTOLOGIST

Non-canonical structure, function and phylogeny of the BsisterMADS-box geneOsMADS30of rice (Oryza sativa)

(2015) Susanne Schilling et al.   PLANT JOURNAL

Identification of theVERNALIZATION 4gene reveals the origin of spring growth habit in ancient wheats from South Asia

(2015) Nestor Kippes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dissecting meiotic recombination based on tetrad analysis by single-microspore sequencing in maize

(2015) Xiang Li et al.   Nature Communications

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide analysis of the MADS-box gene family in Brassica rapa (Chinese cabbage)

(2014) Weike Duan et al.   MOLECULAR GENETICS AND GENOMICS

Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew

(2014) Yanpeng Wang et al.   NATURE BIOTECHNOLOGY

The floral transcriptome ofEucalyptus grandis

(2014) Kelly J. Vining et al.   NEW PHYTOLOGIST

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

miR824-Regulated AGAMOUS-LIKE16 Contributes to Flowering Time Repression in Arabidopsis

(2014) J.-Y. Hu et al.   PLANT CELL

Genome-Wide Analysis of the MADS-Box Gene Family in Brachypodium distachyon

(2014) Bo Wei et al.   PLoS One

Structural and functional partitioning of bread wheat chromosome 3B

(2014) F. Choulet et al.   SCIENCE

Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice

(2013) Jérôme Puig et al.   GENE EXPRESSION PATTERNS

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Ins and Outs of the Rice AGAMOUS Subfamily

(2013) Ludovico Dreni et al.   Molecular Plant

Draft genome of the wheat A-genome progenitor Triticum urartu

(2013) Hong-Qing Ling et al.   NATURE

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

(2013) Jizeng Jia et al.   NATURE

Functional Conservation of MIKC*-Type MADS Box Genes in Arabidopsis and Rice Pollen Maturation

(2013) Y. Liu et al.   PLANT CELL

Crops that feed the world 10. Past successes and future challenges to the role played by wheat in global food security

(2013) Bekele Shiferaw et al.   Food Security

The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14

(2013) Siyi Guo et al.   Nature Communications

FLOWERING LOCUS C in monocots and the tandem origin of angiosperm-specific MADS-box genes

(2013) Philip Ruelens et al.   Nature Communications

The MADS29 Transcription Factor Regulates the Degradation of the Nucellus and the Nucellar Projection during Rice Seed Development

(2012) L.-L. Yin et al.   PLANT CELL

Targeted inactivation of transcription factors by overexpression of their truncated forms in plants

(2012) Pil Joon Seo et al.   PLANT JOURNAL

Live and Let Die - The Bsister MADS-Box Gene OsMADS29 Controls the Degeneration of Cells in Maternal Tissues during Seed Development of Rice (Oryza sativa)

(2012) Xuelian Yang et al.   PLoS One

Wheat TILLING Mutants Show That the Vernalization Gene VRN1 Down-Regulates the Flowering Repressor VRN2 in Leaves but Is Not Essential for Flowering

(2012) Andrew Chen et al.   PLoS Genetics

The MADS box genes SEEDSTICK and ARABIDOPSIS Bsister play a maternal role in fertilization and seed development

(2011) Chiara Mizzotti et al.   PLANT JOURNAL

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

A hitchhiker's guide to the MADS world of plants

(2010) Lydia Gramzow et al.   GENOME BIOLOGY

Wheat

(2009) P. R. Shewry   JOURNAL OF EXPERIMENTAL BOTANY

Class D and Bsister MADS-box genes are associated with ectopic ovule formation in the pistil-like stamens of alloplasmic wheat (Triticum aestivum L.)

(2009) Kaori Yamada et al.   PLANT MOLECULAR BIOLOGY

The ‘ABC’ of MADS domain protein behaviour and interactions

(2009) Richard G.H. Immink et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

SEPALLATA3: the 'glue' for MADS box transcription factor complex formation

(2009) Richard GH Immink et al.   GENOME BIOLOGY

The class E floral homeotic protein SEPALLATA3 is sufficient to loop DNA in ‘floral quartet’-like complexes in vitro

(2008) Rainer Melzer et al.   NUCLEIC ACIDS RESEARCH