Soil Microbial Biogeography in a Changing World: Recent Advances and Future Perspectives

Cross-Biome Drivers of Soil Bacterial Alpha Diversity on a Worldwide Scale

(2019) Manuel Delgado-Baquerizo et al.   ECOSYSTEMS

Ant colonies promote the diversity of soil microbial communities

(2019) Manuel Delgado-Baquerizo et al.   ISME Journal

Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems

(2019) Shuo Jiao et al.   Microbiome

Changes in belowground biodiversity during ecosystem development

(2019) Manuel Delgado-Baquerizo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Obscure soil microbes and where to find them

(2019) Manuel Delgado-Baquerizo   ISME Journal

Microbiome engineering: enhancing climate resilience in corals

(2019) Hannah E Epstein et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Global patterns in fine root decomposition: climate, chemistry, mycorrhizal association and woodiness

(2019) Craig R. See et al.   ECOLOGY LETTERS

Range-expansion effects on the belowground plant microbiome

(2019) Kelly S. Ramirez et al.   Nature Ecology & Evolution

Climatic controls of decomposition drive the global biogeography of forest-tree symbioses

(2019) B. S. Steidinger et al.   NATURE

Trophic Regulations of the Soil Microbiome

(2019) Madhav P. Thakur et al.   TRENDS IN MICROBIOLOGY

A few Ascomycota taxa dominate soil fungal communities worldwide

(2019) Eleonora Egidi et al.   Nature Communications

Strengthening Insights in Microbial Ecological Networks from Theory to Applications

(2019) Xiaofei Lv et al.   mSystems

Improving performance of microbial biocontrol agents against plant diseases

(2019) Malek Marian et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

Soil nematode abundance and functional group composition at a global scale

(2019) Johan van den Hoogen et al.   NATURE

Coral microbiome dynamics, functions and design in a changing world

(2019) Madeleine J. H. van Oppen et al.   NATURE REVIEWS MICROBIOLOGY

A methodological framework to embrace soil biodiversity

(2019) Stefan Geisen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic Evaluation of Bacterial and Fungal Assemblages Enriched within Diffusion Chambers and Microbial Traps Containing Uraniferous Soils

(2019) Rajneesh Jaswal et al.   Microorganisms

Global distribution of earthworm diversity

(2019) Helen R. P. Phillips et al.   SCIENCE

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

(2019) Cameron Wagg et al.   Nature Communications

Taxonomic and functional characterization of a microbial community from a volcanic englacial ecosystem in Deception Island, Antarctica

(2019) Emma Martinez-Alonso et al.   Scientific Reports

Climatic vulnerabilities and ecological preferences of soil invertebrates across biomes

(2019) Felipe Bastida et al.   MOLECULAR ECOLOGY

Ecological drivers of soil microbial diversity and soil biological networks in the Southern Hemisphere

(2018) Manuel Delgado-Baquerizo et al.   ECOLOGY

Decoupling the direct and indirect effects of climate on plant litter decomposition: Accounting for stress-induced modifications in plant chemistry

(2018) Vidya Suseela et al.   GLOBAL CHANGE BIOLOGY

Drought consistently alters the composition of soil fungal and bacterial communities in grasslands from two continents

(2018) Raúl Ochoa-Hueso et al.   GLOBAL CHANGE BIOLOGY

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession

(2018) Rüdiger Ortiz-Álvarez et al.   ISME Journal

Plant attributes explain the distribution of soil microbial communities in two contrasting regions of the globe

(2018) Manuel Delgado-Baquerizo et al.   NEW PHYTOLOGIST

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Climate shapes the protein abundance of dominant soil bacteria

(2018) Felipe Bastida et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Linking soil biology and chemistry in biological soil crust using isolate exometabolomics

(2018) Tami L. Swenson et al.   Nature Communications

Absolute quantitation of microbiota abundance in environmental samples

(2018) Andrzej Tkacz et al.   Microbiome

Population dynamics of synthetic terraformation motifs

(2018) Ricard V. Solé et al.   Royal Society Open Science

Biogeography of soil bacteria and archaea across France

(2018) Battle Karimi et al.   Science Advances

Earth Microbiome Project and Global Systems Biology

(2018) Jack A. Gilbert et al.   mSystems

Global gaps in soil biodiversity data

(2018) Erin K. Cameron et al.   Nature Ecology & Evolution

Microbes follow Humboldt: temperature drives plant and soil microbial diversity patterns from the Amazon to the Andes

(2018) Andrew T. Nottingham et al.   ECOLOGY

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Next-generation bacterial taxonomy

(2018) Ashley York   NATURE REVIEWS MICROBIOLOGY

Soil bacterial networks are less stable under drought than fungal networks

(2018) Franciska T. de Vries et al.   Nature Communications

Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China

(2018) Teng Yang et al.   ISME Journal

Body size determines soil community assembly in a tropical forest

(2018) Lucie Zinger et al.   MOLECULAR ECOLOGY

Can we predict keystones?

(2018) Lisa Röttjers et al.   NATURE REVIEWS MICROBIOLOGY

Reply to ‘Can we predict microbial keystones?’

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes

(2018) Joshua Ladau et al.   mSystems

Microbial richness and composition independently drive soil multifunctionality

(2017) Manuel Delgado-Baquerizo et al.   FUNCTIONAL ECOLOGY

A communal catalogue reveals Earth’s multiscale microbial diversity

(2017) Luke R. Thompson et al.   NATURE

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Soil fungal diversity in natural grasslands of the Tibetan Plateau: associations with plant diversity and productivity

(2017) Teng Yang et al.   NEW PHYTOLOGIST

Diversity and co-occurrence network of soil fungi are more responsive than those of bacteria to shifts in precipitation seasonality in a subtropical forest

(2017) Dan He et al.   SOIL BIOLOGY & BIOCHEMISTRY

A test of the hierarchical model of litter decomposition

(2017) Mark A. Bradford et al.   Nature Ecology & Evolution

Palaeoclimate explains a unique proportion of the global variation in soil bacterial communities

(2017) Manuel Delgado-Baquerizo et al.   Nature Ecology & Evolution

Mapping and predictive variations of soil bacterial richness across France

(2017) Sébastien Terrat et al.   PLoS One

Mapping and validating predictions of soil bacterial biodiversity using European and national scale datasets

(2016) Robert I. Griffiths et al.   APPLIED SOIL ECOLOGY

Regional and global elevational patterns of microbial species richness and evenness

(2016) Jianjun Wang et al.   ECOGRAPHY

Carbon content and climate variability drive global soil bacterial diversity patterns

(2016) Manuel Delgado-Baquerizo et al.   ECOLOGICAL MONOGRAPHS

Ectomycorrhizal fungi slow soil carbon cycling

(2016) Colin Averill et al.   ECOLOGY LETTERS

Identifying the microbial taxa that consistently respond to soil warming across time and space

(2016) Angela M. Oliverio et al.   GLOBAL CHANGE BIOLOGY

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

Mammalian engineers drive soil microbial communities and ecosystem functions across a disturbance gradient

(2016) David J. Eldridge et al.   JOURNAL OF ANIMAL ECOLOGY

Microbial eukaryote plankton communities of high-mountain lakes from three continents exhibit strong biogeographic patterns

(2016) Sabine Filker et al.   MOLECULAR ECOLOGY

Global biogeography of microbial nitrogen-cycling traits in soil

(2016) Michaeline B. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The distribution characteristics of the major capsid gene (g23) of T4-type phages in paddy floodwater in Northeast China

(2016) Junjie Liu et al.   SOIL SCIENCE AND PLANT NUTRITION

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Novel groups and unique distribution of phage phoH genes in paddy waters in northeast China

(2016) Xinzhen Wang et al.   Scientific Reports

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

Predicted global distribution of Burkholderia pseudomallei and burden of melioidosis

(2016) Direk Limmathurotsakul et al.   Nature Microbiology

Synthetic circuit designs for earth terraformation

(2015) Ricard V. Solé et al.   Biology Direct

The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China

(2015) Lemian Liu et al.   ISME Journal

Increasing aridity reduces soil microbial diversity and abundance in global drylands

(2015) Fernando T. Maestre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The links between ecosystem multifunctionality and above- and belowground biodiversity are mediated by climate

(2015) Xin Jing et al.   Nature Communications

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Chemical diversity of microbial volatiles and their potential for plant growth and productivity

(2015) Chidananda Nagamangala Kanchiswamy et al.   Frontiers in Plant Science

Contrasting elevational diversity patterns between eukaryotic soil microbes and plants

(2014) Congcong Shen et al.   ECOLOGY

Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide

(2014) Suzanne M. Prober et al.   ECOLOGY LETTERS

The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan

(2014) Yumiko Miyamoto et al.   ISME Journal

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Biogeographic patterns in ocean microbes emerge in a neutral agent-based model

(2014) F. L. Hellweger et al.   SCIENCE

Priming effect and microbial diversity in ecosystem functioning and response to global change: a modeling approach using the SYMPHONY model

(2013) Nazia Perveen et al.   GLOBAL CHANGE BIOLOGY

A meta-analysis of changes in bacterial and archaeal communities with time

(2013) Ashley Shade et al.   ISME Journal

Loss in microbial diversity affects nitrogen cycling in soil

(2013) Laurent Philippot et al.   ISME Journal

Abiotic drivers and plant traits explain landscape-scale patterns in soil microbial communities

(2012) Franciska T. de Vries et al.   ECOLOGY LETTERS

Macroecology of pollination networks

(2012) Kristian Trøjelsgaard et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Global biogeography of highly diverse protistan communities in soil

(2012) Scott T Bates et al.   ISME Journal

Modeling microbial communities: Current, developing, and future technologies for predicting microbial community interaction

(2012) Peter Larsen et al.   JOURNAL OF BIOTECHNOLOGY

Elevational Patterns in Archaeal Diversity on Mt. Fuji

(2012) Dharmesh Singh et al.   PLoS One

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity of Interaction Types and Ecological Community Stability

(2012) A. Mougi et al.   SCIENCE

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phylogenetic diversity and assemblage of major capsid genes (g23) of T4-type bacteriophages in paddy field soils during rice growth season in Northeast China

(2012) Junjie Liu et al.   SOIL SCIENCE AND PLANT NUTRITION

Cultivation of unculturable soil bacteria

(2012) Van H.T. Pham et al.   TRENDS IN BIOTECHNOLOGY

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

A Hump-Backed Trend in Bacterial Diversity with Elevation on Mount Fuji, Japan

(2011) Dharmesh Singh et al.   MICROBIAL ECOLOGY

Microbes do not follow the elevational diversity patterns of plants and animals

(2010) Noah Fierer et al.   ECOLOGY

Soil microbes drive the classic plant diversity–productivity pattern

(2010) Stefan A. Schnitzer et al.   ECOLOGY

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes

(2010) Haiyan Chu et al.   ENVIRONMENTAL MICROBIOLOGY

Determinants of the distribution of nitrogen-cycling microbial communities at the landscape scale

(2010) D Bru et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Stability of Ecological Communities and the Architecture of Mutualistic and Trophic Networks

(2010) E. Thebault et al.   SCIENCE

Controls on Diatom Biogeography in the Ocean

(2009) P. Cermeno et al.   SCIENCE

Microbial diversity and the genetic nature of microbial species

(2008) Mark Achtman et al.   NATURE REVIEWS MICROBIOLOGY

A latitudinal diversity gradient in planktonic marine bacteria

(2008) J. A. Fuhrman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA