Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession

Microbial succession dynamics along glacier forefield chronosequences in Tierra del Fuego (Chile)

(2017) Miguel Angel Fernández-Martínez et al.   POLAR BIOLOGY

Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

(2015) Tadashi Fukami   Annual Review of Ecology Evolution and Systematics

Terrestrial origin of bacterial communities in complex boreal freshwater networks

(2015) Clara Ruiz-González et al.   ECOLOGY LETTERS

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Decreases in average bacterial community rRNA operon copy number during succession

(2015) Diana R Nemergut et al.   ISME Journal

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

(2015) Jizhong Zhou et al.   mBio

Patterns of Gut Bacterial Colonization in Three Primate Species

(2015) Erin A. McKenney et al.   PLoS One

Ecological Specialization of Two Photobiont-Specific Maritime Cyanolichen Species of the Genus Lichina

(2015) Rüdiger Ortiz-Álvarez et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Abiotic stress tolerance and competition-related traits underlie phylogenetic clustering in soil bacterial communities

(2014) Marta Goberna et al.   ECOLOGY LETTERS

Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria

(2014) Albert Barberán et al.   ECOLOGY LETTERS

Successional Change in Microbial Communities of Benthic Phormidium-Dominated Biofilms

(2014) Katie A. Brasell et al.   MICROBIAL ECOLOGY

Nutrient Addition Dramatically Accelerates Microbial Community Succession

(2014) Joseph E. Knelman et al.   PLoS One

Diverse metabolic and stress-tolerance pathways in chasmoendolithic and soil communities of Miers Valley, McMurdo Dry Valleys, Antarctica

(2014) Sean T. S. Wei et al.   POLAR BIOLOGY

Patterned progression of bacterial populations in the premature infant gut

(2014) P. S. La Rosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial diversity and composition during rain events with and without Saharan dust influence reaching a high mountain lake in the Alps

(2014) Hannes Peter et al.   Environmental Microbiology Reports

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Microbial Succession in the Gut: Directional Trends of Taxonomic and Functional Change in a Birth Cohort of Spanish Infants

(2014) Yvonne Vallès et al.   PLoS Genetics

Microbial biodiversity in saline shallow lakes of the Monegros Desert, Spain

(2013) Emilio O. Casamayor et al.   FEMS MICROBIOLOGY ECOLOGY

Convergent effects of elevation on functional leaf traits within and among species

(2013) Quentin D. Read et al.   FUNCTIONAL ECOLOGY

Bacterial colonization of Hydra hatchlings follows a robust temporal pattern

(2013) Sören Franzenburg et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils

(2013) Shawn P. Brown et al.   MOLECULAR ECOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

IMG 4 version of the integrated microbial genomes comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Unexpected Diversity during Community Succession in the Apple Flower Microbiome

(2013) A. Shade et al.   mBio

Microbiome Assembly across Multiple Body Sites in Low-Birthweight Infants

(2013) E. K. Costello et al.   mBio

A phylogenomic analysis of Escherichia coli / Shigella group: implications of genomic features associated with pathogenicity and ecological adaptation

(2012) Yan Zhang et al.   BMC EVOLUTIONARY BIOLOGY

Diel gene expression profiles of a phosphorus limited mountain lake using metatranscriptomics

(2012) Maria Vila-Costa et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial Diversity across Individual Lichens

(2011) Alexandra A. Mushegian et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stochastic trajectories of succession initiated by extreme climatic events

(2011) J. Kreyling et al.   ECOLOGY LETTERS

Estimating phosphorus availability for microbial growth in an emerging landscape

(2011) S.K. Schmidt et al.   GEODERMA

Exploration of community traits as ecological markers in microbial metagenomes

(2011) ALBERT BARBERÁN et al.   MOLECULAR ECOLOGY

A close relationship between primary nucleotides sequence structure and the composition of functional genes in the genome of prokaryotes

(2011) Juan A.L. Garcia et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Soil Microorganisms Mediating Phosphorus Availability Update on Microbial Phosphorus

(2011) A. E. Richardson et al.   PLANT PHYSIOLOGY

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Four opportunities for studies of ecological succession

(2011) Karel Prach et al.   TRENDS IN ECOLOGY & EVOLUTION

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Changes through time: integrating microorganisms into the study of succession

(2010) Noah Fierer et al.   RESEARCH IN MICROBIOLOGY

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics

(2009) Amanda J. Redford et al.   MICROBIAL ECOLOGY

A safe operating space for humanity

(2009) Johan Rockström et al.   NATURE

Molecular and functional responses of soil microbial communities under grassland restoration

(2008) Pierre Plassart et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA