Absolute quantitation of microbiota abundance in environmental samples

Quantitative microbiome profiling links gut community variation to microbial load

(2017) Doris Vandeputte et al.   NATURE

Editorial: Bifidobacteria and Their Role in the Human Gut Microbiota

(2017) Francesca Turroni et al.   Frontiers in Microbiology

Metagenome-Wide Association Study and Machine Learning Prediction of Bulk Soil Microbiome and Crop Productivity

(2017) Hao-Xun Chang et al.   Frontiers in Microbiology

Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa

(2017) Zhaojing Zhang et al.   Scientific Reports

Microbiome-wide association studies link dynamic microbial consortia to disease

(2016) Jack A. Gilbert et al.   NATURE

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

(2016) Daryl M Gohl et al.   NATURE BIOTECHNOLOGY

Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management

(2016) R. Poudel et al.   PHYTOPATHOLOGY

Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling

(2016) Ashish A. Malik et al.   Frontiers in Microbiology

Marker genes that are less conserved in their sequences are useful for predicting genome-wide similarity levels between closely related prokaryotic strains

(2016) Yemin Lan et al.   Microbiome

Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

(2016) Frank Stämmler et al.   Microbiome

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

The Gut-Brain Axis: The Missing Link in Depression

(2015) Alper Evrensel et al.   Clinical Psychopharmacology and Neuroscience

Abundance of Broad Bacterial Taxa in the Sargasso Sea Explained by Environmental Conditions but Not Water Mass

(2014) J. Sjostedt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

Optimal Eukaryotic 18S and Universal 16S/18S Ribosomal RNA Primers and Their Application in a Study of Symbiosis

(2014) Yong Wang et al.   PLoS One

Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants

(2013) Thomas R Turner et al.   ISME Journal

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments

(2013) Kateryna Zhalnina et al.   Frontiers in Microbiology

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Synthetic spike-in standards for RNA-seq experiments

(2011) L. Jiang et al.   GENOME RESEARCH

Predicting relatedness of bacterial genomes using the chaperonin-60 universal target (cpn60 UT): Application to Thermoanaerobacter species

(2011) Tobin J. Verbeke et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Strain-Dependent Variation in 18S Ribosomal DNA Copy Numbers in Aspergillus fumigatus

(2009) M. L. Herrera et al.   JOURNAL OF CLINICAL MICROBIOLOGY

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST