Capturing Differential Allele-Level Expression and Genotypes of All Classical HLA Loci and Haplotypes by a New Capture RNA-Seq Method

Expression estimation and eQTL mapping for HLA genes with a personalized pipeline

(2019) Vitor R. C. Aguiar et al.   PLoS Genetics

Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion

(2018) Shanrong Zhao et al.   Scientific Reports

A cis-eQTL of HLA-DPB1 Affects Susceptibility to Type 1 Autoimmune Hepatitis

(2018) Tomoo Yamazaki et al.   Scientific Reports

Reference Grade Characterization of Polymorphisms in Full-Length HLA Class I and II Genes With Short-Read Sequencing on the ION PGM System and Long-Reads Generated by Single Molecule, Real-Time Sequencing on the PacBio Platform

(2018) Shingo Suzuki et al.   Frontiers in Immunology

Sequence and Phylogenetic Analysis of the Untranslated Promoter Regions forHLAClass I Genes

(2017) Veron Ramsuran et al.   JOURNAL OF IMMUNOLOGY

HLA gene expression is altered in whole blood and placenta from women who later developed preeclampsia

(2017) Heather Y. Small et al.   PHYSIOLOGICAL GENOMICS

The immunopeptidomic landscape of ovarian carcinomas

(2017) Heiko Schuster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural and regulatory diversity shape HLA-C protein expression levels

(2017) Gurman Kaur et al.   Nature Communications

HLA Association with Drug-Induced Adverse Reactions

(2017) Wen-Lang Fan et al.   Journal of Immunology Research

An Expanded Role for HLA Genes: HLA-B Encodes a microRNA that Regulates IgA and Other Immune Response Transcripts

(2017) Nilesh Chitnis et al.   Frontiers in Immunology

Upregulation of HLA Expression in Primary Uveal Melanoma by Infiltrating Leukocytes

(2016) T. Huibertus van Essen et al.   PLoS One

Cost-efficient multiplex PCR for routine genotyping of up to nine classical HLA loci in a single analytical run of multiple samples by next generation sequencing

(2015) Yuki Ozaki et al.   BMC GENOMICS

HLA typing using next generation sequencing: An overview

(2015) Henry A. Erlich   HUMAN IMMUNOLOGY

Epigenetic regulation of differentialHLA-Aallelic expression levels

(2015) Veron Ramsuran et al.   HUMAN MOLECULAR GENETICS

The impact of next-generation sequencing technologies on HLA research

(2015) Kazuyoshi Hosomichi et al.   JOURNAL OF HUMAN GENETICS

High HLA-DP Expression and Graft-versus-Host Disease

(2015) Effie W. Petersdorf et al.   NEW ENGLAND JOURNAL OF MEDICINE

Immunogenetics of HLA-DP — A New View of Permissible Mismatches

(2015) Katharina Fleischhauer   NEW ENGLAND JOURNAL OF MEDICINE

Clinical Role of Human Leukocyte Antigen in Health and Disease

(2015) Y. M. Mosaad   SCANDINAVIAN JOURNAL OF IMMUNOLOGY

Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels

(2015) Patrick Deelen et al.   Genome Medicine

HLA-C expression levels define permissible mismatches in hematopoietic cell transplantation

(2014) E. W. Petersdorf et al.   BLOOD

Biological significance of HLA locus matching in unrelated donor bone marrow transplantation

(2014) Y. Morishima et al.   BLOOD

High-allelic variability in HLA-C mRNA expression: association with HLA-extended haplotypes

(2014) F Bettens et al.   GENES AND IMMUNITY

Decreased expression of HLA-DQ and HLA-DR on cells of the monocytic lineage in cystic fibrosis

(2014) Thomas P. Hofer et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Targeted sequencing for gene discovery and quantification using RNA CaptureSeq

(2014) Tim R Mercer et al.   Nature Protocols

The IPD and IMGT/HLA database: allele variant databases

(2014) James Robinson et al.   NUCLEIC ACIDS RESEARCH

Downregulation of MHC-I Expression Is Prevalent but Reversible in Merkel Cell Carcinoma

(2014) K. G. Paulson et al.   Cancer Immunology Research

A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines

(2014) Sebastian Boegel et al.   OncoImmunology

Major Histocompatibility Complex Genomics and Human Disease

(2013) John Trowsdale et al.   Annual Review of Genomics and Human Genetics

Expression of the Genes Encoding Human Leucocyte Antigens-A, -B, -DP, -DQ and -G in Gastric Cancer Patients

(2013) Y Zhang et al.   JOURNAL OF INTERNATIONAL MEDICAL RESEARCH

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

(2013) Linn Fagerberg et al.   MOLECULAR & CELLULAR PROTEOMICS

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

Genetic interplay between HLA-C and MIR148A in HIV control and Crohn disease

(2013) S. Kulkarni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of HLA-C Expression Level on HIV Control

(2013) R. Apps et al.   SCIENCE

HLA-DRB1, -DRB3, -DRB4 and -DRB5 genotyping at a super-high resolution level by long range PCR and high-throughput sequencing

(2013) Y. Ozaki et al.   TISSUE ANTIGENS

Next-generation sequencing can revealin vitro-generated PCR crossover products: some artifactual sequences correspond to HLA alleles in the IMGT/HLA database

(2013) C. L. Holcomb et al.   TISSUE ANTIGENS

A Novel Variant Marking HLA-DP Expression Levels Predicts Recovery from Hepatitis B Virus Infection

(2012) R. Thomas et al.   JOURNAL OF VIROLOGY

High-throughput, high-fidelity HLA genotyping with deep sequencing

(2012) C. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Up-regulated expression of HLA-DRB5 transcripts and high frequency of the HLA-DRB5*01:05 allele in scleroderma patients with interstitial lung disease

(2012) T. Odani et al.   RHEUMATOLOGY

Super high resolution for single molecule-sequence-based typing of classical HLA loci at the 8-digit level using next generation sequencers

(2012) T. Shiina et al.   TISSUE ANTIGENS

The umbilical cord: a rich and ethical stem cell source to advance regenerative medicine

(2011) N. Forraz et al.   CELL PROLIFERATION

Differential microRNA regulation of HLA-C expression and its association with HIV control

(2011) Smita Kulkarni et al.   NATURE

Analysis of HLA–ABC locus-specific transcription in normal tissues

(2010) Ana Belén García-Ruano et al.   IMMUNOGENETICS

Differential expression of HLA-DQ alleles in peripheral blood mononuclear cells: alleles associated with susceptibility to and protection from autoimmune type 1 diabetes

(2009) A. C. Britten et al.   International Journal of Immunogenetics

The HLA genomic loci map: expression, interaction, diversity and disease

(2009) Takashi Shiina et al.   JOURNAL OF HUMAN GENETICS

HLA-C cell surface expression and control of HIV/AIDS correlate with a variant upstream of HLA-C

(2009) Rasmi Thomas et al.   NATURE GENETICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS