Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples
出版年份 2019 全文链接
标题
Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples
作者
关键词
-
出版物
PLoS One
Volume 14, Issue 12, Pages e0225409
出版商
Public Library of Science (PLoS)
发表日期
2019-12-13
DOI
10.1371/journal.pone.0225409
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Can high-throughput sequencing detect macroinvertebrate diversity for routine monitoring of an urban river?
- (2018) Melissa E. Carew et al. ECOLOGICAL INDICATORS
- Towards robust and repeatable sampling methods in eDNA-based studies
- (2018) Ian A. Dickie et al. Molecular Ecology Resources
- Comparison of environmental DNA and bulk-sample metabarcoding using highly degenerate cytochrome c oxidase I primers
- (2018) Jan-Niklas Macher et al. Molecular Ecology Resources
- Over 2.5 million COI sequences in GenBank and growing
- (2018) Teresita M. Porter et al. PLoS One
- Environmental DNA metabarcoding studies are critically affected by substrate selection
- (2018) Adam Koziol et al. Molecular Ecology Resources
- Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
- (2017) Benjamin J Callahan et al. ISME Journal
- Normalization and microbial differential abundance strategies depend upon data characteristics
- (2017) Sophie Weiss et al. Microbiome
- DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments
- (2017) Anders Lanzén et al. PLoS One
- Big data opportunities and challenges for assessing multiple stressors across scales in aquatic ecosystems
- (2016) K. A. Dafforn et al. MARINE AND FRESHWATER RESEARCH
- Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
- (2016) Alice Valentini et al. MOLECULAR ECOLOGY
- A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring
- (2016) Mehrdad Hajibabaei et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- From writing to reading the encyclopedia of life
- (2016) Paul D. N. Hebert et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Environmental DNA reveals that rivers are conveyer belts of biodiversity information
- (2016) Kristy Deiner et al. Nature Communications
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Fishing in the Water: Effect of Sampled Water Volume on Environmental DNA-Based Detection of Macroinvertebrates
- (2015) Elvira Mächler et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- The downside of eDNA as a survey tool in water bodies
- (2015) Jean-Marc Roussel et al. JOURNAL OF APPLIED ECOLOGY
- A framework for estimating the sensitivity of eDNA surveys
- (2015) Elise M. Furlan et al. Molecular Ecology Resources
- Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates
- (2015) Eddy J. Dowle et al. Molecular Ecology Resources
- Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol
- (2015) Vasco Elbrecht et al. PLoS One
- Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing
- (2015) Joel F. Gibson et al. PLoS One
- Modeling the Sensitivity of Field Surveys for Detection of Environmental DNA (eDNA)
- (2015) Martin T. Schultz et al. PLoS One
- High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems
- (2015) Franck Lejzerowicz et al. Scientific Reports
- Environmental DNA surveillance for invertebrate species: advantages and technical limitations to detect invasive crayfishProcambarus clarkiiin freshwater ponds
- (2014) Anne Tréguier et al. JOURNAL OF APPLIED ECOLOGY
- REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology
- (2014) Helen C. Rees et al. JOURNAL OF APPLIED ECOLOGY
- Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data
- (2014) Gentile F. Ficetola et al. Molecular Ecology Resources
- Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics
- (2014) J. Gibson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Environmental DNA for wildlife biology and biodiversity monitoring
- (2014) Kristine Bohmann et al. TRENDS IN ECOLOGY & EVOLUTION
- The tiny mayfly in the room: implications of size-dependent invertebrate taxonomic identification for biomonitoring data properties
- (2013) Jessica M. Orlofske et al. AQUATIC ECOLOGY
- Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing
- (2012) DONALD J. BAIRD et al. MOLECULAR ECOLOGY
- Next-generation sequencing technologies for environmental DNA research
- (2012) SHADI SHOKRALLA et al. MOLECULAR ECOLOGY
- DNA from soil mirrors plant taxonomic and growth form diversity
- (2012) N. G. YOCCOZ et al. MOLECULAR ECOLOGY
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- The golden age of DNA metasystematics
- (2012) Mehrdad Hajibabaei TRENDS IN GENETICS
- Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol
- (2012) Mehrdad Hajibabaei et al. BMC ECOLOGY
- Incorporation of DNA barcoding into a large-scale biomonitoring program: opportunities and pitfalls
- (2011) Erik M. Pilgrim et al. JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY
- Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality?
- (2011) Bernard W. Sweeney et al. JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY
- Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos
- (2011) Mehrdad Hajibabaei et al. PLoS One
- Incorporating traits in aquatic biomonitoring to enhance causal diagnosis and prediction
- (2010) Joseph M Culp et al. Integrated Environmental Assessment and Management
- Species detection using environmental DNA from water samples
- (2008) G. F. Ficetola et al. Biology Letters
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