Specific subfamilies of transposable elements contribute to different domains of T lymphocyte enhancers
出版年份 2020 全文链接
标题
Specific subfamilies of transposable elements contribute to different domains of T lymphocyte enhancers
作者
关键词
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出版物
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 117, Issue 14, Pages 7905-7916
出版商
Proceedings of the National Academy of Sciences
发表日期
2020-03-20
DOI
10.1073/pnas.1912008117
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila
- (2019) Gabriel E. Rech et al. PLoS Genetics
- Paired-end mappability of transposable elements in the human genome
- (2019) Corinne E. Sexton et al. Mobile DNA
- ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
- (2018) Jianhong Ou et al. BMC GENOMICS
- Human Enhancers Harboring Specific Sequence Composition, Activity, and Genome Organization Are Linked to the Immune Response
- (2018) Charles-Henri Lecellier et al. GENETICS
- Human Enhancers Harboring Specific Sequence Composition, Activity, and Genome Organization Are Linked to the Immune Response
- (2018) Charles-Henri Lecellier et al. GENETICS
- Comparative Analysis of Immune Cells Reveals a Conserved Regulatory Lexicon
- (2018) Elisa Donnard et al. Cell Systems
- Enhancer redundancy provides phenotypic robustness in mammalian development
- (2018) Marco Osterwalder et al. NATURE
- Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions
- (2018) Yaqiang Cao et al. GENOME RESEARCH
- Transposable elements are the primary source of novelty in primate gene regulation
- (2017) Marco Trizzino et al. GENOME RESEARCH
- Activation of MouseTcrb: Uncoupling RUNX1 Function from Its Cooperative Binding with ETS1
- (2017) Jiang-yang Zhao et al. JOURNAL OF IMMUNOLOGY
- Identification of H3K4me1-associated proteins at mammalian enhancers
- (2017) Andrea Local et al. NATURE GENETICS
- Coevolution between transposable elements and recombination
- (2017) Tyler V. Kent et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Ets transcription factor GABP controls T cell homeostasis and immunity
- (2017) Chong T. Luo et al. Nature Communications
- Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation
- (2016) Jernej Godec et al. IMMUNITY
- CD8 + T Cells Utilize Highly Dynamic Enhancer Repertoires and Regulatory Circuitry in Response to Infections
- (2016) Bing He et al. IMMUNITY
- Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire
- (2016) Peter J. Thompson et al. MOLECULAR CELL
- Tcf1 and Lef1 transcription factors establish CD8+ T cell identity through intrinsic HDAC activity
- (2016) Shaojun Xing et al. NATURE IMMUNOLOGY
- Regulatory activities of transposable elements: from conflicts to benefits
- (2016) Edward B. Chuong et al. NATURE REVIEWS GENETICS
- Peak-valley-peak pattern of histone modifications delineates active regulatory elements and their directionality
- (2016) Sachin Pundhir et al. NUCLEIC ACIDS RESEARCH
- Regulatory evolution of innate immunity through co-option of endogenous retroviruses
- (2016) E. B. Chuong et al. SCIENCE
- Unraveling determinants of transcription factor binding outside the core binding site
- (2015) Michal Levo et al. GENOME RESEARCH
- A widespread role of the motif environment in transcription factor binding across diverse protein families
- (2015) Iris Dror et al. GENOME RESEARCH
- ICOS Coreceptor Signaling Inactivates the Transcription Factor FOXO1 to Promote Tfh Cell Differentiation
- (2015) Erica L. Stone et al. IMMUNITY
- An Enhancer of the IL-7 Receptor α-Chain Locus Controls IL-7 Receptor Expression and Maintenance of Peripheral T Cells
- (2015) Akifumi Abe et al. JOURNAL OF IMMUNOLOGY
- Super-enhancers delineate disease-associated regulatory nodes in T cells
- (2015) Golnaz Vahedi et al. NATURE
- The Dfam database of repetitive DNA families
- (2015) Robert Hubley et al. NUCLEIC ACIDS RESEARCH
- Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy
- (2015) Vincent J. Lynch et al. Cell Reports
- 3D genome organization in health and disease: emerging opportunities in cancer translational medicine
- (2015) Deepak Babu et al. Nucleus
- 3D genome organization in health and disease: emerging opportunities in cancer translational medicine
- (2015) Deepak Babu et al. Nucleus
- Widespread contribution of transposable elements to the innovation of gene regulatory networks
- (2014) Vasavi Sundaram et al. GENOME RESEARCH
- Making the Bend: DNA Tertiary Structure and Protein-DNA Interactions
- (2014) Sabrina Harteis et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibility
- (2014) Grégory Seumois et al. NATURE IMMUNOLOGY
- Chromatin state dynamics during blood formation
- (2014) D. Lara-Astiaso et al. SCIENCE
- Absence of a simple code: how transcription factors read the genome
- (2014) Matthew Slattery et al. TRENDS IN BIOCHEMICAL SCIENCES
- Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression
- (2014) Daudi Jjingo et al. Mobile DNA
- “One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
- (2014) Marc Bailly-Bechet et al. Mobile DNA
- DNA-Binding Specificities of Human Transcription Factors
- (2013) Arttu Jolma et al. CELL
- Endogenous retroviruses function as species-specific enhancer elements in the placenta
- (2013) Edward B Chuong et al. NATURE GENETICS
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- The Majority of Primate-Specific Regulatory Sequences Are Derived from Transposable Elements
- (2013) Pierre-Étienne Jacques et al. PLoS Genetics
- An epigenetic silencing pathway controlling T helper 2 cell lineage commitment
- (2012) Rhys S. Allan et al. NATURE
- A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs
- (2012) Morgane Thomas-Chollier et al. Nature Protocols
- Biological Robustness: Paradigms, Mechanisms, and Systems Principles
- (2012) James Michael Whitacre Frontiers in Genetics
- Prediction of Transposable Element Derived Enhancers Using Chromatin Modification Profiles
- (2011) Ahsan Huda et al. PLoS One
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Effects of Alu elements on global nucleosome positioning in the human genome
- (2010) Yoshiaki Tanaka et al. BMC GENOMICS
- Ets-1 Maintains IL-7 Receptor Expression in Peripheral T Cells
- (2010) R. Grenningloh et al. JOURNAL OF IMMUNOLOGY
- Phenotypic robustness conferred by apparently redundant transcriptional enhancers
- (2010) Nicolás Frankel et al. NATURE
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- Transposable elements have rewired the core regulatory network of human embryonic stem cells
- (2010) Galih Kunarso et al. NATURE GENETICS
- Histone H3K27ac separates active from poised enhancers and predicts developmental state
- (2010) M. P. Creyghton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An Essential Role of the Forkhead-Box Transcription Factor Foxo1 in Control of T Cell Homeostasis and Tolerance
- (2009) Weiming Ouyang et al. IMMUNITY
- Domain analyses of the Runx1 transcription factor responsible for modulating T-cell receptor-β/CD4 and interleukin-4/interferon-γ expression in CD4+peripheral T lymphocytes
- (2009) Ryuji Uchino IMMUNOLOGY
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- The role of DNA shape in protein–DNA recognition
- (2009) Remo Rohs et al. NATURE
- Quantifying Adaptive Evolution in the Drosophila Immune System
- (2009) Darren J. Obbard et al. PLoS Genetics
- Dynamic Regulation of Nucleosome Positioning in the Human Genome
- (2008) Dustin E. Schones et al. CELL
- Evolution of the mammalian transcription factor binding repertoire via transposable elements
- (2008) G. Bourque et al. GENOME RESEARCH
- Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
- (2008) Yair Field et al. PLoS Computational Biology
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