标题
Understanding epigenomics based on the rice model
作者
关键词
-
出版物
THEORETICAL AND APPLIED GENETICS
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-01-02
DOI
10.1007/s00122-019-03518-7
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Physiological and Transcriptome Analyses Reveal Short-Term Responses and Formation of Memory Under Drought Stress in Rice
- (2019) Ping Li et al. Frontiers in Genetics
- DNA methylation repatterning accompanying hybridization, whole genome doubling and homoeolog exchange in nascent segmental rice allotetraploids
- (2019) Ning Li et al. NEW PHYTOLOGIST
- Tissue‐specific Hi‐C analyses of rice, foxtail millet and maize suggest non‐canonical function of plant chromatin domains
- (2019) Pengfei Dong et al. Journal of Integrative Plant Biology
- A microRNA biogenesis-like pathway for producing phased small interfering RNA from a long non-coding RNA in rice
- (2019) Ji Huang et al. JOURNAL OF EXPERIMENTAL BOTANY
- Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis
- (2019) Helian Liu et al. BMC GENOMICS
- MicroRNAs and Their Regulatory Roles in Plant–Environment Interactions
- (2019) Xianwei Song et al. Annual Review of Plant Biology
- Specific chromatin changes mark lateral organ founder cells in the Arabidopsis thaliana inflorescence meristem
- (2019) Anneke Frerichs et al. JOURNAL OF EXPERIMENTAL BOTANY
- Salt-Responsive Genes Are Differentially Regulated At The Chromatin Levels Between Seedlings And Roots In Rice
- (2019) Dongyang Zheng et al. PLANT AND CELL PHYSIOLOGY
- Transgenerational memory of gene expression changes induced by heavy metal stress in rice (Oryza sativa L.)
- (2019) Weixuan Cong et al. BMC PLANT BIOLOGY
- Chromatin interaction maps reveal genetic regulation for quantitative traits in maize
- (2019) Yong Peng et al. Nature Communications
- Dynamic control of enhancer activity drives stage-specific gene expression during flower morphogenesis
- (2019) Wenhao Yan et al. Nature Communications
- Global Quantitative Mapping of Enhancers in Rice by STARR-seq
- (2019) Jialei Sun et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation
- (2019) Lun Zhao et al. Nature Communications
- Exploring the relationship between intron retention and chromatin accessibility in plants
- (2018) Fahad Ullah et al. BMC GENOMICS
- Genome-wide analysis of long non-coding RNAs affecting roots development at an early stage in the rice response to cadmium stress
- (2018) Liang Chen et al. BMC GENOMICS
- Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies
- (2018) Sang-Yoon Shin et al. BMC GENOMICS
- Identification of cis -regulatory elements by chromatin structure
- (2018) Zefu Lu et al. CURRENT OPINION IN PLANT BIOLOGY
- Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots
- (2018) Atul Kakrana et al. GENOME RESEARCH
- Rice H2A.Z negatively regulates genes responsive to nutrient starvation but promotes expression of key housekeeping genes
- (2018) Sara Zahraeifard et al. JOURNAL OF EXPERIMENTAL BOTANY
- Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development
- (2018) Chao Li et al. Journal of Integrative Plant Biology
- Global involvement of lysine crotonylation in protein modification and transcription regulation in rice
- (2018) Shuai Liu et al. MOLECULAR & CELLULAR PROTEOMICS
- Dynamics and function of DNA methylation in plants
- (2018) Huiming Zhang et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- A novel antisense long noncoding RNA,TWISTED LEAF , maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice
- (2018) Xue Liu et al. NEW PHYTOLOGIST
- Replication-coupled histone H3.1 deposition determines nucleosome composition and heterochromatin dynamics during Arabidopsis seedling development
- (2018) Matthias Benoit et al. NEW PHYTOLOGIST
- Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs
- (2018) Parth Patel et al. NEW PHYTOLOGIST
- WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice
- (2018) Saifeng Cheng et al. NUCLEIC ACIDS RESEARCH
- Deep Sequencing Uncovers Rice Long siRNAs and Its Involvement in Immunity Against Rhizoctonia solani
- (2018) Dongdong Niu et al. PHYTOPATHOLOGY
- Transgene-independent heredity of RdDM-mediated transcriptional gene silencing of endogenous genes in rice
- (2018) Yuhya Wakasa et al. PLANT BIOTECHNOLOGY JOURNAL
- Biogenesis and regulatory hierarchy of phased small interfering RNAs in plants
- (2018) Pingchuan Deng et al. PLANT BIOTECHNOLOGY JOURNAL
- Stress-responsive regulation of long non-coding RNA polyadenylation in Oryza sativa
- (2018) Jiapei Yuan et al. PLANT JOURNAL
- Changes in chromatin accessibility between Arabidopsis stem cells and mesophyll cells illuminate cell type-specific transcription factor networks
- (2018) Paja Sijacic et al. PLANT JOURNAL
- Genome-wide Hi-C analysis reveals extensive hierarchical chromatin interactions in rice
- (2018) Qianli Dong et al. PLANT JOURNAL
- Reproductive Long Intergenic Noncoding RNAs Exhibit Male Gamete Specificity and Polycomb Repressive Complex 2-Mediated Repression
- (2018) Cameron Johnson et al. PLANT PHYSIOLOGY
- DDM1 Represses Noncoding RNA Expression and RNA-Directed DNA Methylation in Heterochromatin
- (2018) Feng Tan et al. PLANT PHYSIOLOGY
- EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum
- (2018) Seijiro Ono et al. PLoS Genetics
- Transposon-Derived Non-coding RNAs and Their Function in Plants
- (2018) Jungnam Cho Frontiers in Plant Science
- A Genomic View of Alternative Splicing of Long Non-coding RNAs during Rice Seed Development Reveals Extensive Splicing and lncRNA Gene Families
- (2018) Edward A. Kiegle et al. Frontiers in Plant Science
- EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis
- (2018) Zhenlin Yang et al. NATURE GENETICS
- Interactive and noninteractive roles of histone H2B monoubiquitination and H3K36 methylation in the regulation of active gene transcription and control of plant growth and development
- (2018) Wei Zhao et al. NEW PHYTOLOGIST
- Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice
- (2018) Ying Wang et al. Nature Communications
- Dehydration Stress Memory: Gene Networks Linked to Physiological Responses During Repeated Stresses of Zea mays
- (2018) Laetitia Virlouvet et al. Frontiers in Plant Science
- Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus
- (2018) Meiling Yang et al. BMC PLANT BIOLOGY
- N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses
- (2018) Qian Zhang et al. Molecular Plant
- OsACL-A2 negatively regulates cell death and disease resistance in rice
- (2018) Banpu Ruan et al. PLANT BIOTECHNOLOGY JOURNAL
- Regulatory chromatin landscape in Arabidopsis thaliana roots uncovered by coupling INTACT and ATAC-seq
- (2018) Miriam Tannenbaum et al. Plant Methods
- An epiallele of riceAK1affects photosynthetic capacity
- (2017) Xiangjin Wei et al. Journal of Integrative Plant Biology
- Dynamic and Antagonistic Allele-Specific Epigenetic Modifications Controlling the Expression of Imprinted Genes in Maize Endosperm
- (2017) Xiaomei Dong et al. Molecular Plant
- H2A.Z Represses Gene Expression by Modulating Promoter Nucleosome Structure and Enhancer Histone Modifications in Arabidopsis
- (2017) Xiaozhuan Dai et al. Molecular Plant
- Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions
- (2017) Xingwang Li et al. Nature Protocols
- SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development
- (2017) Kunpeng Liu et al. NEW PHYTOLOGIST
- N6-adenine DNA methylation is associated with the linker DNA of H2A.Z-containing well-positioned nucleosomes in Pol II-transcribed genes in Tetrahymena
- (2017) Yuanyuan Wang et al. NUCLEIC ACIDS RESEARCH
- The Emergence, Evolution, and Diversification of the miR390-TAS3-ARF Pathway in Land Plants
- (2017) Rui Xia et al. PLANT CELL
- Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of Crown Root Meristem
- (2017) Shaoli Zhou et al. PLANT CELL
- Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules
- (2017) Kelsey A. Maher et al. PLANT CELL
- Dual Role of the Histone Variant H2A.Z in Transcriptional Regulation of Stress-Response Genes
- (2017) Weronika Sura et al. PLANT CELL
- The gymnastics of epigenomics in rice
- (2017) Aditya Banerjee et al. PLANT CELL REPORTS
- Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in plants
- (2017) Dong Wang et al. PLANT JOURNAL
- Differential deposition of H2A.Z in combination with histone modifications within related genes in Oryza sativa callus and seedling
- (2017) Kang Zhang et al. PLANT JOURNAL
- Parental DNA Methylation States Are Associated with Heterosis in Epigenetic Hybrids
- (2017) Kathrin Lauss et al. PLANT PHYSIOLOGY
- The Arabidopsis DNA Methylome Is Stable under Transgenerational Drought Stress
- (2017) Diep R. Ganguly et al. PLANT PHYSIOLOGY
- Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit
- (2017) Zhaobo Lang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA N6-methyladenine is dynamically regulated in the mouse brain following environmental stress
- (2017) Bing Yao et al. Nature Communications
- Transgenerational epimutations induced by multi-generation drought imposition mediate rice plant’s adaptation to drought condition
- (2017) Xiaoguo Zheng et al. Scientific Reports
- A Small RNA Pathway Mediates Allelic Dosage in Endosperm
- (2017) Robert M. Erdmann et al. Cell Reports
- Gene-body CG methylation and divergent expression of duplicate genes in rice
- (2017) Xutong Wang et al. Scientific Reports
- Histone modifications facilitate the coexpression of bidirectional promoters in rice
- (2016) Yuan Fang et al. BMC GENOMICS
- Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice
- (2016) Inuk Jung et al. BMC Systems Biology
- Perspectives on the interactions between metabolism, redox, and epigenetics in plants
- (2016) Yuan Shen et al. JOURNAL OF EXPERIMENTAL BOTANY
- Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways
- (2016) Qili Fei et al. JOURNAL OF EXPERIMENTAL BOTANY
- Biogenesis of diverse plant phasiRNAs involves an miRNA-trigger and Dicer-processing
- (2016) Reina Komiya JOURNAL OF PLANT RESEARCH
- Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters
- (2016) Afsaneh Goudarzi et al. MOLECULAR CELL
- Control of Leaf Senescence by an MeOH-Jasmonates Cascade that Is Epigenetically Regulated by OsSRT1 in Rice
- (2016) ChuanYing Fang et al. Molecular Plant
- DNA methylation on N6-adenine in mammalian embryonic stem cells
- (2016) Tao P. Wu et al. NATURE
- Metabolic regulation of gene expression through histone acylations
- (2016) Benjamin R. Sabari et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Multi-omics maps of cotton fibre reveal epigenetic basis for staged single-cell differentiation
- (2016) Maojun Wang et al. NUCLEIC ACIDS RESEARCH
- Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes
- (2016) Zefu Lu et al. NUCLEIC ACIDS RESEARCH
- Analysis of Chromatin Regulators Reveals Specific Features of Rice DNA Methylation Pathways
- (2016) Feng Tan et al. PLANT PHYSIOLOGY
- OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression
- (2016) Hua Zhang et al. PLANT SCIENCE
- Twenty-four–nucleotide siRNAs produce heritable trans-chromosomal methylation in F1Arabidopsishybrids
- (2016) Ian K. Greaves et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Methylation interactions inArabidopsishybrids require RNA-directed DNA methylation and are influenced by genetic variation
- (2016) Qingzhu Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Role of DNA methylation in hybrid vigor inArabidopsis thaliana
- (2016) Takahiro Kawanabe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice
- (2016) Yourong Fan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA demethylation is initiated in the central cells ofArabidopsisand rice
- (2016) Kyunghyuk Park et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mobile small RNAs regulate genome-wide DNA methylation
- (2016) Mathew G. Lewsey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Abundant DNA 6mA methylation during early embryogenesis of zebrafish and pig
- (2016) Jianzhao Liu et al. Nature Communications
- Functional characterization of open chromatin in bidirectional promoters of rice
- (2016) Yuan Fang et al. Scientific Reports
- The structure of the core NuRD repression complex provides insights into its interaction with chromatin
- (2016) Christopher J Millard et al. eLife
- Epigenetic regulation and epigenomic landscape in rice
- (2016) Xian Deng et al. National Science Review
- RNA-Directed DNA Methylation: The Evolution of a Complex Epigenetic Pathway in Flowering Plants
- (2015) Marjori A. Matzke et al. Annual Review of Plant Biology
- Global epigenomic analysis indicates that Epialleles contribute to Allele-specific expression via Allele-specific histone modifications in hybrid rice
- (2015) Zhibin Guo et al. BMC GENOMICS
- JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators
- (2015) Yuxuan Hou et al. BMC PLANT BIOLOGY
- DNA Methylation on N6-Adenine in C. elegans
- (2015) Eric Lieberman Greer et al. CELL
- N6-Methyladenine DNA Modification in Drosophila
- (2015) Guoqiang Zhang et al. CELL
- N6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas
- (2015) Ye Fu et al. CELL
- The ‘dark matter’ in the plant genomes: non-coding and unannotated DNA sequences associated with open chromatin
- (2015) Jiming Jiang CURRENT OPINION IN PLANT BIOLOGY
- Epigenetic and developmental regulation in plant polyploids
- (2015) Qingxin Song et al. CURRENT OPINION IN PLANT BIOLOGY
- High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns inArabidopsisand rice
- (2015) Li Lu et al. Epigenetics
- STARR-seq — Principles and applications
- (2015) Felix Muerdter et al. GENOMICS
- Intracellular Crotonyl-CoA Stimulates Transcription through p300-Catalyzed Histone Crotonylation
- (2015) Benjamin R. Sabari et al. MOLECULAR CELL
- Identification of methylated deoxyadenosines in vertebrates reveals diversity in DNA modifications
- (2015) Magdalena J Koziol et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa )
- (2015) Bing Liu et al. NEW PHYTOLOGIST
- PlantDHS: a database for DNase I hypersensitive sites in plants
- (2015) Tao Zhang et al. NUCLEIC ACIDS RESEARCH
- Regulation of Histone Methylation and Reprogramming of Gene Expression in the Rice Inflorescence Meristem
- (2015) Xiaoyun Liu et al. PLANT CELL
- Genome-Wide Prediction and Validation of Intergenic Enhancers in Arabidopsis Using Open Chromatin Signatures
- (2015) Bo Zhu et al. PLANT CELL
- Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition
- (2015) Chaoyang Cheng et al. PLANT JOURNAL
- Analysis of non-coding transcriptome in rice and maize uncovers roles of conserved lncRNAs associated with agriculture traits
- (2015) Huan Wang et al. PLANT JOURNAL
- Epigenetic Changes in Hybrids
- (2015) Ian K. Greaves et al. PLANT PHYSIOLOGY
- Global Analysis Reveals the Crucial Roles of DNA Methylation during Rice Seed Development
- (2015) Mei-Qing Xing et al. PLANT PHYSIOLOGY
- Small RNAs and Gene Network in a Durable Disease Resistance Gene—Mediated Defense Responses in Rice
- (2015) Hanming Hong et al. PLoS One
- Autotetraploid rice methylome analysis reveals methylation variation of transposable elements and their effects on gene expression
- (2015) Jie Zhang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers
- (2015) Jixian Zhai et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Histone Acetylation Enzymes Coordinate Metabolism and Gene Expression
- (2015) Yuan Shen et al. TRENDS IN PLANT SCIENCE
- Identification of methylated deoxyadenosines in vertebrates reveals diversity in DNA modifications
- (2015) Magdalena J Koziol et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Histone H3K4me3 and H3K27me3 regulatory genes control stable transmission of an epimutation in rice
- (2015) Xiangsong Chen et al. Scientific Reports
- Ancient and Novel Small RNA Pathways Compensate for the Loss of piRNAs in Multiple Independent Nematode Lineages
- (2015) Peter Sarkies et al. PLOS BIOLOGY
- Composition of the SAGA complex in plants and its role in controlling gene expression in response to abiotic stresses
- (2015) Felipe Moraga et al. Frontiers in Plant Science
- Epigenetic events in plant male germ cell heat stress responses
- (2015) Yuanyuan Chen et al. Plant Reproduction
- The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis
- (2014) Nicolas G. Bologna et al. Annual Review of Plant Biology
- Histone H3 Dynamics in Plant Cell Cycle and Development
- (2014) Sofía Otero et al. CYTOGENETIC AND GENOME RESEARCH
- Proteomic profiling of cardiac tissue by isolation of nuclei tagged in specific cell types (INTACT)
- (2014) N. M. Amin et al. DEVELOPMENT
- Genome-wide Hi-C Analyses in Wild-Type and Mutants Reveal High-Resolution Chromatin Interactions in Arabidopsis
- (2014) Suhua Feng et al. MOLECULAR CELL
- Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs
- (2014) Reina Komiya et al. PLANT JOURNAL
- Se14, Encoding a JmjC Domain-Containing Protein, Plays Key Roles in Long-Day Suppression of Rice Flowering through the Demethylation of H3K4me3 of RFT1
- (2014) Takayuki Yokoo et al. PLoS One
- Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice
- (2014) L. Wei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Inheritance of Trans Chromosomal Methylation patterns fromArabidopsisF1 hybrids
- (2014) Ian K. Greaves et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality
- (2014) L. Hu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Classification and Comparison of Small RNAs from Plants
- (2013) Michael J. Axtell Annual Review of Plant Biology
- Biogenesis and function of rice small RNAs from non-coding RNA precursors
- (2013) Siwaret Arikit et al. CURRENT OPINION IN PLANT BIOLOGY
- Rice epigenomics and epigenetics: challenges and opportunities
- (2013) Xiangsong Chen et al. CURRENT OPINION IN PLANT BIOLOGY
- A double take on bivalent promoters
- (2013) P. Voigt et al. GENES & DEVELOPMENT
- Centromere Epigenetics in Plants
- (2013) James A. Birchler et al. Journal of Genetics and Genomics
- The Hierarchy of the 3D Genome
- (2013) Johan H. Gibcus et al. MOLECULAR CELL
- Genome-Wide Analysis of Histone Modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica
- (2013) Zhou Du et al. Molecular Plant
- Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
- (2013) Silin Zhong et al. NATURE BIOTECHNOLOGY
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data
- (2013) Job Dekker et al. NATURE REVIEWS GENETICS
- A Rice cis-Natural Antisense RNA Acts as a Translational Enhancer for Its Cognate mRNA and Contributes to Phosphate Homeostasis and Plant Fitness
- (2013) M. Jabnoune et al. PLANT CELL
- Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks
- (2013) Q. Fei et al. PLANT CELL
- Jumonji C Domain Protein JMJ705-Mediated Removal of Histone H3 Lysine 27 Trimethylation Is Involved in Defense-Related Gene Activation in Rice
- (2013) T. Li et al. PLANT CELL
- Widespread Long Noncoding RNAs as Endogenous Target Mimics for MicroRNAs in Plants
- (2013) H.-J. Wu et al. PLANT PHYSIOLOGY
- The Rice NAD+-Dependent Histone Deacetylase OsSRT1 Targets Preferentially to Stress- and Metabolism-Related Genes and Transposable Elements
- (2013) Xiaochao Zhong et al. PLoS One
- Control of transposon activity by a histone H3K4 demethylase in rice
- (2013) X. Cui et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm
- (2013) J. A. Rodrigues et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structural Basis of a Histone H3 Lysine 4 Demethylase Required for Stem Elongation in Rice
- (2013) Qingfeng Chen et al. PLoS Genetics
- Plants regenerated from tissue culture contain stable epigenome changes in rice
- (2013) Hume Stroud et al. eLife
- Protein Lysine Acylation and Cysteine Succination by Intermediates of Energy Metabolism
- (2012) Hening Lin et al. ACS Chemical Biology
- Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
- (2012) Xin Li et al. BMC GENOMICS
- Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA
- (2012) Joseph P. Calarco et al. CELL
- Epigenomic Modification and Epigenetic Regulation in Rice
- (2012) Yu Zhao et al. Journal of Genetics and Genomics
- H3K36 Methylation Is Involved in Promoting Rice Flowering
- (2012) Pengfei Sui et al. Molecular Plant
- Understanding the language of Lys36 methylation at histone H3
- (2012) Eric J. Wagner et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Histone H2A.Z inheritance during the cell cycle and its impact on promoter organization and dynamics
- (2012) Maxim Nekrasov et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The Histone Methyltransferase SDG724 Mediates H3K36me2/3 Deposition at MADS50 and RFT1 and Promotes Flowering in Rice
- (2012) C. Sun et al. PLANT CELL
- Identification and Characterization of an Epi-Allele of FIE1 Reveals a Regulatory Linkage between Two Epigenetic Marks in Rice
- (2012) L. Zhang et al. PLANT CELL
- HDT701, a Histone H4 Deacetylase, Negatively Regulates Plant Innate Immunity by Modulating Histone H4 Acetylation of Defense-Related Genes in Rice
- (2012) B. Ding et al. PLANT CELL
- Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation
- (2012) Satoru Moritoh et al. PLANT JOURNAL
- Genome-wide profiling of histone H3K4-tri-methylation and gene expression in rice under drought stress
- (2012) Wei Zong et al. PLANT MOLECULAR BIOLOGY
- Transgenerational Inheritance of Modified DNA Methylation Patterns and Enhanced Tolerance Induced by Heavy Metal Stress in Rice (Oryza sativa L.)
- (2012) Xiufang Ou et al. PLoS One
- A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice
- (2012) J. Ding et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome
- (2012) Y. Hu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Trans Chromosomal Methylation in Arabidopsis hybrids
- (2012) I. K. Greaves et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transcriptome and methylome interactions in rice hybrids
- (2012) Ramakrishna K. Chodavarapu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes
- (2012) C. A. Ibarra et al. SCIENCE
- Dynamic Deposition of Histone Variant H3.3 Accompanies Developmental Remodeling of the Arabidopsis Transcriptome
- (2012) Heike Wollmann et al. PLoS Genetics
- Mobile 24 nt Small RNAs Direct Transcriptional Gene Silencing in the Root Meristems of Arabidopsis thaliana
- (2011) Charles W. Melnyk et al. CURRENT BIOLOGY
- Multiple roles for small RNAs during plant reproduction
- (2011) Frédéric Van Ex et al. CURRENT OPINION IN PLANT BIOLOGY
- Dynamics of histone H3 lysine 27 trimethylation in plant development
- (2011) Binglian Zheng et al. CURRENT OPINION IN PLANT BIOLOGY
- Intercellular and systemic movement of RNA silencing signals
- (2011) Charles W Melnyk et al. EMBO JOURNAL
- ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
- (2011) Matthew D. Young et al. NUCLEIC ACIDS RESEARCH
- Euchromatic Subdomains in Rice Centromeres Are Associated with Genes and Transcription
- (2011) Yufeng Wu et al. PLANT CELL
- Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
- (2011) Xianwei Song et al. PLANT JOURNAL
- H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice
- (2011) Pengfei Sui et al. PLANT JOURNAL
- Altered Levels of Histone Deacetylase OsHDT1 Affect Differential Gene Expression Patterns in Hybrid Rice
- (2011) Chen Li et al. PLoS One
- A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice
- (2011) H. La et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Histone Methylation in Higher Plants
- (2010) Chunyan Liu et al. Annual Review of Plant Biology
- Small RNAs, DNA methylation and transposable elements in wheat
- (2010) Dario Cantu et al. BMC GENOMICS
- SDG714 Regulates Specific Gene Expression and Consequently Affects Plant Growth via H3K9 Dimethylation
- (2010) Bo Ding et al. Journal of Integrative Plant Biology
- DNA Methylation Mediated by a MicroRNA Pathway
- (2010) Liang Wu et al. MOLECULAR CELL
- Rice SUVH Histone Methyltransferase Genes Display Specific Functions in Chromatin Modification and Retrotransposon Repression
- (2010) Fu-Jun Qin et al. Molecular Plant
- Establishing, maintaining and modifying DNA methylation patterns in plants and animals
- (2010) Julie A. Law et al. NATURE REVIEWS GENETICS
- Histone variants — ancient wrap artists of the epigenome
- (2010) Paul B. Talbert et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids
- (2010) G. He et al. PLANT CELL
- Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice
- (2010) Yongsheng Yan et al. PLANT JOURNAL
- Local DNA hypomethylation activates genes in rice endosperm
- (2010) A. Zemach et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
- (2010) A. Zemach et al. SCIENCE
- Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells
- (2010) A. Molnar et al. SCIENCE
- Active DNA Demethylation Mediated by DNA Glycosylases
- (2009) Jian-Kang Zhu Annual Review of Genetics
- Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen
- (2009) R. Keith Slotkin et al. CELL
- Origin, Biogenesis, and Activity of Plant MicroRNAs
- (2009) Olivier Voinnet CELL
- Redefining MicroRNA Targets
- (2009) Hervé Seitz CURRENT BIOLOGY
- RNA-mediated chromatin-based silencing in plants
- (2009) Marjori Matzke et al. CURRENT OPINION IN CELL BIOLOGY
- Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
- (2009) C. Johnson et al. GENOME RESEARCH
- An oestrogen-receptor-α-bound human chromatin interactome
- (2009) Melissa J. Fullwood et al. NATURE
- Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize
- (2009) X. Wang et al. PLANT CELL
- A metastable DWARF1 epigenetic mutant affecting plant stature in rice
- (2009) K. Miura et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA-directed DNA methylation and demethylation in plants
- (2009) Viswanathan Chinnusamy et al. Science in China. Series C, Life sciences / Chinese Academy of Sciences
- Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana
- (2009) Xiaoyu Zhang et al. GENOME BIOLOGY
- H2AZ Is Enriched at Polycomb Complex Target Genes in ES Cells and Is Necessary for Lineage Commitment
- (2008) Menno P. Creyghton et al. CELL
- High-Resolution Mapping and Characterization of Open Chromatin across the Genome
- (2008) Alan P. Boyle et al. CELL
- Integration of Cytological Features with Molecular and Epigenetic Properties of Rice Chromosome 4
- (2008) Ben-Liang Yin et al. Molecular Plant
- Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
- (2008) Daniel Zilberman et al. NATURE
- Criteria for Annotation of Plant MicroRNAs
- (2008) B. C. Meyers et al. PLANT CELL
- High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression
- (2008) X. Li et al. PLANT CELL
- Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development
- (2008) Q. Sun et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started