Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways

Regulatory Role of a Receptor-Like Kinase in Specifying Anther Cell Identity

(2016) Li Yang et al.   PLANT PHYSIOLOGY

Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis

(2016) Stefanie Dukowic-Schulze et al.   Frontiers in Plant Science

Evolution, functions, and mysteries of plant ARGONAUTE proteins

(2015) Han Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers

(2015) Jixian Zhai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA

(2015) Jianguo Wu et al.   eLife

Identification and characterization of Argonaute gene family and meiosis-enriched Argonaute during sporogenesis in maize

(2014) Lihong Zhai et al.   Journal of Integrative Plant Biology

Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs

(2014) Reina Komiya et al.   PLANT JOURNAL

Classification and Comparison of Small RNAs from Plants

(2013) Michael J. Axtell   Annual Review of Plant Biology

Biogenesis and function of rice small RNAs from non-coding RNA precursors

(2013) Siwaret Arikit et al.   CURRENT OPINION IN PLANT BIOLOGY

Specification of tapetum and microsporocyte cells within the anther

(2013) Dabing Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

Evolutionary conservation of microRNA regulatory programs in plant flower development

(2013) Yan Luo et al.   DEVELOPMENTAL BIOLOGY

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

(2013) Stephane E. Castel et al.   NATURE REVIEWS GENETICS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks

(2013) Q. Fei et al.   PLANT CELL

Maize multiple archesporial cells 1 (mac1), an ortholog of rice TDL1A, modulates cell proliferation and identity in early anther development

(2012) C.-J. R. Wang et al.   DEVELOPMENT

Somatic small RNA pathways promote the mitotic events of megagametogenesis during female reproductive development in Arabidopsis

(2012) M. R. Tucker et al.   DEVELOPMENT

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther

(2012) Lilan Hong et al.   NEW PHYTOLOGIST

Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in rice

(2011) Priyanka Deveshwar et al.   BMC PLANT BIOLOGY

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs

(2011) J. Zhai et al.   GENES & DEVELOPMENT

Flower development in rice

(2011) Hitoshi Yoshida et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cytological analysis and genetic control of rice anther development

(2011) Dabing Zhang et al.   Journal of Genetics and Genomics

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

(2011) Xianwei Song et al.   PLANT JOURNAL

Two AP2 family genes, SUPERNUMERARY BRACT (SNB) and OsINDETERMINATE SPIKELET 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice

(2011) Dong-Yeon Lee et al.   PLANT JOURNAL

Divergent Expression Patterns of miR164 and CUP-SHAPED COTYLEDON Genes in Palms and Other Monocots: Implication for the Evolution of Meristem Function in Angiosperms

(2010) H. Adam et al.   MOLECULAR BIOLOGY AND EVOLUTION

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

(2010) Yongqing Jiao et al.   NATURE GENETICS

OsSPL14 promotes panicle branching and higher grain productivity in rice

(2010) Kotaro Miura et al.   NATURE GENETICS

Distinct Regulation of Adaxial-Abaxial Polarity in Anther Patterning in Rice

(2010) T. Toriba et al.   PLANT CELL

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa)

(2009) Qian-Hao Zhu et al.   BMC PLANT BIOLOGY

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Stamen specification and anther development in rice

(2009) DaBing Zhang et al.   CHINESE SCIENCE BULLETIN

Clusters and superclusters of phased small RNAs in the developing inflorescence of rice

(2009) C. Johnson et al.   GENOME RESEARCH

Rice MicroRNA Effector Complexes and Targets

(2009) L. Wu et al.   PLANT CELL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

OsTDL1A binds to the LRR domain of rice receptor kinase MSP1, and is required to limit sporocyte numbers

(2008) Xinai Zhao et al.   PLANT JOURNAL

Signaling of cell fate determination by the TPD1 small protein and EMS1 receptor kinase

(2008) G. Jia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA