Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis

Correlation Coefficients

(2018) Patrick Schober et al.   ANESTHESIA AND ANALGESIA

CsSPL functions as an adaptor between HD-ZIP III and CsWUS transcription factors regulating anther and ovule development in Cucumis sativus (cucumber)

(2018) Xiaofeng Liu et al.   PLANT JOURNAL

Identification and characterization of long noncoding RNA in Paulownia tomentosa treated with methyl methane sulfonate

(2018) Zhe Wang et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Identification and expression analysis of microRNAs during ovule development in rice (Oryza sativa) by deep sequencing

(2017) Ya Wu et al.   PLANT CELL REPORTS

Long noncoding miRNA gene represses wheat β-diketone waxes

(2017) Daiqing Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Subtraction Profiling Identifies Candidate miRNAs Involved in Rice Female Gametophyte Abortion

(2017) Liyu Yang et al.   G3-Genes Genomes Genetics

Genome-wide transcriptome analysis of female-sterile rice ovule shed light on its abortive mechanism

(2016) Liyu Yang et al.   PLANTA

Long non-coding RNAs and their functions in plants

(2015) Julia A Chekanova   CURRENT OPINION IN PLANT BIOLOGY

Small RNA sequencing identifies miRNA roles in ovule and fibre development

(2015) Fuliang Xie et al.   PLANT BIOTECHNOLOGY JOURNAL

Chromatin dynamics during cellular differentiation in the female reproductive lineage of flowering plants

(2015) Célia Baroux et al.   PLANT JOURNAL

Activation ofCYCD7;1in the central cell and early endosperm overcomes cell-cycle arrest in the Arabidopsis female gametophyte, and promotes early endosperm and embryo development

(2015) Emily Sornay et al.   PLANT JOURNAL

Spatiotemporal Sequestration of miR165/166 by Arabidopsis Argonaute10 Promotes Shoot Apical Meristem Maintenance

(2015) Yuyi Zhou et al.   Cell Reports

Auxin Import and Local Auxin Biosynthesis Are Required for Mitotic Divisions, Cell Expansion and Cell Specification during Female Gametophyte Development in Arabidopsis thaliana

(2015) Aneesh Panoli et al.   PLoS One

Gene Expression Profiles in Rice Developing Ovules Provided Evidence for the Role of Sporophytic Tissue in Female Gametophyte Development

(2015) Ya Wu et al.   PLoS One

Characterization of stress-responsive lncRNAs inArabidopsis thalianaby integrating expression, epigenetic and structural features

(2014) Chao Di et al.   PLANT JOURNAL

microRNA156-targeted SPL/SBP box transcription factors regulate tomato ovary and fruit development

(2014) Geraldo Felipe Ferreira e Silva et al.   PLANT JOURNAL

Comparative expression profiling reveals gene functions in female meiosis and gametophyte development in Arabidopsis

(2014) Lihua Zhao et al.   PLANT JOURNAL

Heat shock factor HSFB2a involved in gametophyte development of Arabidopsis thaliana and its expression is controlled by a heat-inducible long non-coding antisense RNA

(2014) Markus Wunderlich et al.   PLANT MOLECULAR BIOLOGY

Gene regulation by the act of long non-coding RNA transcription

(2013) Aleksandra E Kornienko et al.   BMC BIOLOGY

OsMADS16 Genetically Interacts with OsMADS3 and OsMADS58 in Specifying Floral Patterning in Rice

(2013) Dapeng Yun et al.   Molecular Plant

Regulatory mechanisms of long noncoding RNAs in vertebrate central nervous system development and function

(2013) J.L. Knauss et al.   NEUROSCIENCE

Transcriptome Analysis of Developing Ovules in Rice Isolated by Laser Microdissection

(2013) Takahiko Kubo et al.   PLANT AND CELL PHYSIOLOGY

Functional Analysis of Sporophytic Transcripts Repressed by the Female Gametophyte in the Ovule of Arabidopsis thaliana

(2013) Alma Armenta-Medina et al.   PLoS One

MYB64 and MYB119 Are Required for Cellularization and Differentiation during Female Gametogenesis in Arabidopsis thaliana

(2013) David S. Rabiger et al.   PLoS Genetics

D-type cyclins control cell division and developmental rate during Arabidopsis seed development

(2012) Carl Collins et al.   JOURNAL OF EXPERIMENTAL BOTANY

The R2R3 MYB Transcription Factors FOUR LIPS and MYB88 Regulate Female Reproductive Development

(2012) Srilakshmi Makkena et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Transcription Factors BEL1 and SPL Are Required for Cytokinin and Auxin Signaling During Ovule Development in Arabidopsis

(2012) S. Bencivenga et al.   PLANT CELL

BcMF11, a novel non-coding RNA gene from Brassica campestris, is required for pollen development and male fertility

(2012) Jiang-Hua Song et al.   PLANT CELL REPORTS

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

(2012) J. Ding et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA templating the epigenome

(2011) Robert C. Spitale et al.   Epigenetics

Molecular Mechanisms of Long Noncoding RNAs

(2011) Kevin C. Wang et al.   MOLECULAR CELL

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

(2011) Kevin C. Wang et al.   NATURE

Rice MADS6 Interacts with the Floral Homeotic Genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in Specifying Floral Organ Identities and Meristem Fate

(2011) H. Li et al.   PLANT CELL

Cross talk between the sporophyte and the megagametophyte during ovule development

(2011) Stefano Bencivenga et al.   SEXUAL PLANT REPRODUCTION

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

siRNA–Mediated Methylation of Arabidopsis Telomeres

(2010) Jan Vrbsky et al.   PLoS Genetics

Dosage-Sensitive Function of RETINOBLASTOMA RELATED and Convergent Epigenetic Control Are Required during the Arabidopsis Life Cycle

(2010) Amal J. Johnston et al.   PLoS Genetics

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa)

(2009) Qian-Hao Zhu et al.   BMC PLANT BIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

(2009) Szymon Swiezewski et al.   NATURE

Long non-coding RNAs: insights into functions

(2009) Tim R. Mercer et al.   NATURE REVIEWS GENETICS

RNAplex: a fast tool for RNA–RNA interaction search

(2008) Hakim Tafer et al.   BIOINFORMATICS

Effects of dependence in high-dimensional multiple testing problems

(2008) Kyung In Kim et al.   BMC BIOINFORMATICS

A Dynamic Reciprocal RBR-PRC2 Regulatory Circuit Controls Arabidopsis Gametophyte Development

(2008) Amal J. Johnston et al.   CURRENT BIOLOGY

Zm401, a short-open reading-frame mRNA or noncoding RNA, is essential for tapetum and microspore development and can regulate the floret formation in maize

(2008) Jinxia Ma et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Intersection of the RNA Interference and X-Inactivation Pathways

(2008) Y. Ogawa et al.   SCIENCE