标题
Emerging role of tumor-related functional peptides encoded by lncRNA and circRNA
作者
关键词
-
出版物
Molecular Cancer
Volume 19, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-02-04
DOI
10.1186/s12943-020-1147-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Predictive biomarkers and mechanisms underlying resistance to PD1/PD-L1 blockade cancer immunotherapy
- (2020) Daixi Ren et al. Molecular Cancer
- WHISTLE: a high-accuracy map of the human N6-methyladenosine (m6A) epitranscriptome predicted using a machine learning approach
- (2019) Kunqi Chen et al. NUCLEIC ACIDS RESEARCH
- RNA Circularization Diminishes Immunogenicity and Can Extend Translation Duration In Vivo
- (2019) R. Alexander Wesselhoeft et al. MOLECULAR CELL
- A novel protein encoded by a circular RNA circPPP1R12A promotes tumor pathogenesis and metastasis of colon cancer via Hippo-YAP signaling
- (2019) Xiao Zheng et al. Molecular Cancer
- CircSETD3 (Hsa_circ_0000567) acts as a sponge for microRNA-421 inhibiting hepatocellular carcinoma growth
- (2019) Liangliang Xu et al. JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH
- Long noncoding RNA LINC00961 inhibited cell proliferation and invasion through regulating the Wnt/β-catenin signaling pathway in tongue squamous cell carcinoma
- (2019) Lixia Zhang et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Effects and mechanisms of innate immune molecules on inhibiting nasopharyngeal carcinoma
- (2019) Fang Xiong et al. CHINESE MEDICAL JOURNAL
- circ MAN 1A2 could serve as a novel serum biomarker for malignant tumors
- (2019) Chun‐Mei Fan et al. CANCER SCIENCE
- TSC22D2 identified as a candidate susceptibility gene of multi-cancer pedigree using genome-wide linkage analysis and whole exome sequencing
- (2019) Lan Xiao et al. CARCINOGENESIS
- Circbank: a comprehensive database for circRNA with standard nomenclature
- (2019) Ming Liu et al. RNA Biology
- A novel evolutionary conserved mechanism of RNA stability regulates synexpression of primordial germ cell-specific genes prior to the sex-determination stage in medaka
- (2019) Amaury Herpin et al. PLOS BIOLOGY
- m6Acomet: large-scale functional prediction of individual m6A RNA methylation sites from an RNA co-methylation network
- (2019) Xiangyu Wu et al. BMC BIOINFORMATICS
- The Translational Landscape of the Human Heart
- (2019) Sebastiaan van Heesch et al. CELL
- Long non-coding RNA PVT1 interacts with MYC and its downstream molecules to synergistically promote tumorigenesis
- (2019) Ke Jin et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- circLgr4 drives colorectal tumorigenesis and invasion through Lgr4‐targeting peptide
- (2019) Xiaofei Zhi et al. INTERNATIONAL JOURNAL OF CANCER
- m6A enhances the phase separation potential of mRNA
- (2019) Ryan J. Ries et al. NATURE
- A hidden human proteome encoded by ‘non-coding’ genes
- (2019) Shaohua Lu et al. NUCLEIC ACIDS RESEARCH
- Regulation of Gene Expression by N-methyladenosine in Cancer
- (2019) Jun Liu et al. TRENDS IN CELL BIOLOGY
- Transforming activity of an oncoprotein-encoding circular RNA from human papillomavirus
- (2019) Jiawei Zhao et al. Nature Communications
- PVT1 Promotes Cancer Progression via MicroRNAs
- (2019) Wenxi Wang et al. Frontiers in Oncology
- A novel tumor suppressor protein encoded by circular AKT3 RNA inhibits glioblastoma tumorigenicity by competing with active phosphoinositide-dependent Kinase-1
- (2019) Xin Xia et al. Molecular Cancer
- Neoantigen vaccine: an emerging tumor immunotherapy
- (2019) Miao Peng et al. Molecular Cancer
- Long noncoding RNA LINC00961 inhibits cell invasion and metastasis in human non-small cell lung cancer
- (2018) Bin Jiang et al. BIOMEDICINE & PHARMACOTHERAPY
- The small peptide world in long noncoding RNAs
- (2018) Seo-Won Choi et al. BRIEFINGS IN BIOINFORMATICS
- Circular RNAs (circRNAs) in cancer
- (2018) Ruoyu Zhou et al. CANCER LETTERS
- Hidden Peptides Encoded by Putative Noncoding RNAs
- (2018) Akinobu Matsumoto et al. CELL STRUCTURE AND FUNCTION
- Long noncoding RNA LINC00961 inhibits cell proliferation and induces cell apoptosis in human non-small cell lung cancer
- (2018) Zhiwen Huang et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- IRESfinder: Identifying RNA internal ribosome entry site in eukaryotic cell using framed k -mer features
- (2018) Jian Zhao et al. Journal of Genetics and Genomics
- An Evaluation of Function of Multicopy Noncoding RNAs in Mammals Using ENCODE/FANTOM Data and Comparative Genomics
- (2018) Marc P Hoeppner et al. MOLECULAR BIOLOGY AND EVOLUTION
- Circular RNAs function as ceRNAs to regulate and control human cancer progression
- (2018) Yaxian Zhong et al. Molecular Cancer
- Novel insights on m6A RNA methylation in tumorigenesis: a double-edged sword
- (2018) Shaoyun Wang et al. Molecular Cancer
- Novel tumour suppressive protein encoded by circular RNA, circ-SHPRH, in glioblastomas
- (2018) S Begum et al. ONCOGENE
- A novel protein encoded by the circular form of the SHPRH gene suppresses glioma tumorigenesis
- (2018) Maolei Zhang et al. ONCOGENE
- Engineering circular RNA for potent and stable translation in eukaryotic cells
- (2018) R. Alexander Wesselhoeft et al. Nature Communications
- Large-scale intact glycopeptide identification by Mascot database search
- (2018) Ravi Chand Bollineni et al. Scientific Reports
- Discovering Putative Peptides Encoded from Noncoding RNAs in Ribosome Profiling Data of Arabidopsis thaliana
- (2018) Qilin Li et al. ACS Synthetic Biology
- M6APred-EL: A sequence-based predictor for identifying N6-methyladenosine sites using ensemble learning
- (2018) Leyi Wei et al. Molecular Therapy-Nucleic Acids
- iRNA(m6A)-PseDNC: Identifying N6-methyladenosine sites using pseudo dinucleotide composition
- (2018) Wei Chen et al. ANALYTICAL BIOCHEMISTRY
- Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing
- (2018) Linfeng Chen et al. BMC GENOMICS
- Insights into the noncoding RNA-encoded peptides
- (2018) Jinchang Pan et al. PROTEIN AND PEPTIDE LETTERS
- Tissue-Dependent Expression and Translation of Circular RNAs with Recombinant AAV Vectors In Vivo
- (2018) Rita M. Meganck et al. Molecular Therapy-Nucleic Acids
- CircZNF609 promotes breast cancer cell growth, migration, and invasion by elevating p70S6K1 via sponging miR-145-5p
- (2018) Shengting Wang et al. Cancer Management and Research
- DeepM6ASeq: prediction and characterization of m6A-containing sequences using deep learning
- (2018) Yiqian Zhang et al. BMC BIOINFORMATICS
- Long non-coding RNA LOC284454 promotes migration and invasion of nasopharyngeal carcinoma via modulating the Rho/Rac signaling pathway
- (2018) Chunmei Fan et al. CARCINOGENESIS
- LINC00961 restrains cancer progression via modulating epithelial-mesenchymal transition in renal cell carcinoma
- (2018) Dongming Chen et al. JOURNAL OF CELLULAR PHYSIOLOGY
- CircRNA ZNF609 functions as a competitive endogenous RNA to regulate FOXP4 expression by sponging miR-138-5p in renal carcinoma
- (2018) Yunhe Xiong et al. JOURNAL OF CELLULAR PHYSIOLOGY
- Long noncoding RNA AFAP1-AS1 acts as a competing endogenous RNA of miR-423-5p to facilitate nasopharyngeal carcinoma metastasis through regulating the Rho/Rac pathway
- (2018) Yu Lian et al. JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH
- Effects of tumor metabolic microenvironment on regulatory T cells
- (2018) Yi-an Wang et al. Molecular Cancer
- The translation of non-canonical open reading frames controls mucosal immunity
- (2018) Ruaidhrí Jackson et al. NATURE
- A peptide encoded by circular form of LINC-PINT suppresses oncogenic transcriptional elongation in glioblastoma
- (2018) Maolei Zhang et al. Nature Communications
- Application of atomic force microscopy in cancer research
- (2018) Xiangying Deng et al. JOURNAL OF NANOBIOTECHNOLOGY
- Peptides/Proteins Encoded by Non-coding RNA: A Novel Resource Bank for Drug Targets and Biomarkers
- (2018) Song Zhu et al. Frontiers in Pharmacology
- M6AMRFS: Robust Prediction of N6-Methyladenosine Sites With Sequence-Based Features in Multiple Species
- (2018) Xiaoli Qiang et al. Frontiers in Genetics
- Translation of noncoding RNAs: Focus on lncRNAs, pri-miRNAs, and circRNAs
- (2017) Lian-Ju Li et al. EXPERIMENTAL CELL RESEARCH
- circGFRA1 and GFRA1 act as ceRNAs in triple negative breast cancer by regulating miR-34a
- (2017) Rongfang He et al. JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH
- Novel Role of FBXW7 Circular RNA in Repressing Glioma Tumorigenesis
- (2017) Yibing Yang et al. JNCI-Journal of the National Cancer Institute
- Translation of CircRNAs
- (2017) Nagarjuna Reddy Pamudurti et al. MOLECULAR CELL
- Circ-ZNF609 Is a Circular RNA that Can Be Translated and Functions in Myogenesis
- (2017) Ivano Legnini et al. MOLECULAR CELL
- A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth
- (2017) Jin-Zhou Huang et al. MOLECULAR CELL
- An update on sORFs.org: a repository of small ORFs identified by ribosome profiling
- (2017) Volodimir Olexiouk et al. NUCLEIC ACIDS RESEARCH
- CSCD: a database for cancer-specific circular RNAs
- (2017) Siyu Xia et al. NUCLEIC ACIDS RESEARCH
- Clustal Omega for making accurate alignments of many protein sequences
- (2017) Fabian Sievers et al. PROTEIN SCIENCE
- Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function
- (2017) Monika Piwecka et al. SCIENCE
- Circular RNAs: Regulators of Cancer-Related Signaling Pathways and Potential Diagnostic Biomarkers for Human Cancers
- (2017) Zuozhang Yang et al. Theranostics
- Microprocessor Recruitment to Elongating RNA Polymerase II Is Required for Differential Expression of MicroRNAs
- (2017) Victoria A. Church et al. Cell Reports
- High Expression of LINC01420 indicates an unfavorable prognosis and modulates cell migration and invasion in nasopharyngeal carcinoma
- (2017) Liting Yang et al. Journal of Cancer
- Novel Role of FBXW7 Circular RNA in Repressing Glioma Tumorigenesis
- (2017) Yibing Yang et al. JNCI-Journal of the National Cancer Institute
- pRNAm-PC: Predicting N6-methyladenosine sites in RNA sequences via physical–chemical properties
- (2016) Zi Liu et al. ANALYTICAL BIOCHEMISTRY
- Ribosome Footprint Profiling of Translation throughout the Genome
- (2016) Nicholas T. Ingolia CELL
- TargetM6A: Identifying N6-Methyladenosine Sites From RNA Sequences via Position-Specific Nucleotide Propensities and a Support Vector Machine
- (2016) Guang-Qing Li et al. IEEE TRANSACTIONS ON NANOBIOSCIENCE
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- AthMethPre: a web server for the prediction and query of mRNA m6A sites in Arabidopsis thaliana
- (2016) Shunian Xiang et al. Molecular BioSystems
- mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide
- (2016) Akinobu Matsumoto et al. NATURE
- A human microprotein that interacts with the mRNA decapping complex
- (2016) Nadia G D'Lima et al. Nature Chemical Biology
- Unique features of long non-coding RNA biogenesis and function
- (2016) Jeffrey J. Quinn et al. NATURE REVIEWS GENETICS
- Visualization of self-delivering hydrophobically modified siRNA cellular internalization
- (2016) Socheata Ly et al. NUCLEIC ACIDS RESEARCH
- COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features
- (2016) Long Hu et al. NUCLEIC ACIDS RESEARCH
- UniProt: the universal protein knowledgebase
- (2016) NUCLEIC ACIDS RESEARCH
- SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features
- (2016) Yuan Zhou et al. NUCLEIC ACIDS RESEARCH
- RNAMethPre: A Web Server for the Prediction and Query of mRNA m6A Sites
- (2016) Shunian Xiang et al. PLoS One
- A peptide encoded by a transcript annotated as long noncoding RNA enhances SERCA activity in muscle
- (2016) B. R. Nelson et al. SCIENCE
- Posttranscriptional coordination of splicing and miRNA biogenesis in plants
- (2016) Agata Stepien et al. Wiley Interdisciplinary Reviews-RNA
- Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling
- (2016) Anil Raj et al. eLife
- iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data
- (2016) Kun Sun et al. BMC GENOMICS
- IRESPred: Web Server for Prediction of Cellular and Viral Internal Ribosome Entry Site (IRES)
- (2016) Pandurang Kolekar et al. Scientific Reports
- circRNADb: A comprehensive database for human circular RNAs with protein-coding annotations
- (2016) Xiaoping Chen et al. Scientific Reports
- iRNA-Methyl: Identifying N6-methyladenosine sites using pseudo nucleotide composition
- (2015) Wei Chen et al. ANALYTICAL BIOCHEMISTRY
- A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance
- (2015) Douglas M. Anderson et al. CELL
- 5′ UTR m6A Promotes Cap-Independent Translation
- (2015) Kate D. Meyer et al. CELL
- N6-methyladenosine Modulates Messenger RNA Translation Efficiency
- (2015) Xiao Wang et al. CELL
- One Small Step for Muscle: A New Micropeptide Regulates Performance
- (2015) Joanne Tonkin et al. Cell Metabolism
- Primary transcripts of microRNAs encode regulatory peptides
- (2015) Dominique Lauressergues et al. NATURE
- Coding in non-coding RNAs
- (2015) Peter M. Waterhouse et al. NATURE
- Discovery and characterization of smORF-encoded bioactive polypeptides
- (2015) Alan Saghatelian et al. Nature Chemical Biology
- Detecting actively translated open reading frames in ribosome profiling data
- (2015) Lorenzo Calviello et al. NATURE METHODS
- sORFs.org: a repository of small ORFs identified by ribosome profiling
- (2015) Volodimir Olexiouk et al. NUCLEIC ACIDS RESEARCH
- CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs
- (2015) Dawood B. Dudekula et al. RNA Biology
- Regulation of circRNA biogenesis
- (2015) Ling-Ling Chen et al. RNA Biology
- Rolling Circle Translation of Circular RNA in Living Human Cells
- (2015) Naoko Abe et al. Scientific Reports
- Complementary Sequence-Mediated Exon Circularization
- (2014) Xiao-Ou Zhang et al. CELL
- Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation
- (2014) A. A. Bazzini et al. EMBO JOURNAL
- The evolution of lncRNA repertoires and expression patterns in tetrapods
- (2014) Anamaria Necsulea et al. NATURE
- Emerging evidence for functional peptides encoded by short open reading frames
- (2014) Shea J. Andrews et al. NATURE REVIEWS GENETICS
- The dynamic epitranscriptome: N6-methyladenosine and gene expression control
- (2014) Kate D. Meyer et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Novel coding, translation, and gene expression of a replicating covalently closed circular RNA of 220 nt
- (2014) Mounir Georges AbouHaidar et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Efficient backsplicing produces translatable circular mRNAs
- (2014) Yang Wang et al. RNA
- Toddler: An Embryonic Signal That Promotes Cell Movement via Apelin Receptors
- (2014) A. Pauli et al. SCIENCE
- Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes
- (2014) Nicholas T. Ingolia et al. Cell Reports
- Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes
- (2014) Sebastiaan van Heesch et al. GENOME BIOLOGY
- Rolling Circle Amplification in a Prokaryotic Translation System Using Small Circular RNA
- (2013) Naoko Abe et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins
- (2013) Mitchell Guttman et al. CELL
- Natural RNA circles function as efficient microRNA sponges
- (2013) Thomas B. Hansen et al. NATURE
- Circular RNAs are a large class of animal RNAs with regulatory potency
- (2013) Sebastian Memczak et al. NATURE
- Translating mRNAs strongly correlate to proteins in a multivariate manner and their translation ratios are phenotype specific
- (2013) Tong Wang et al. NUCLEIC ACIDS RESEARCH
- An evolutionary conserved pattern of 18S rRNA sequence complementarity to mRNA 5′ UTRs and its implications for eukaryotic gene translation regulation
- (2013) Josef Pánek et al. NUCLEIC ACIDS RESEARCH
- Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts
- (2013) Liang Sun et al. NUCLEIC ACIDS RESEARCH
- Viral IRES Prediction System - a Web Server for Prediction of the IRES Secondary Structure In Silico
- (2013) Jun-Jie Hong et al. PLoS One
- Conserved Regulation of Cardiac Calcium Uptake by Peptides Encoded in Small Open Reading Frames
- (2013) E. G. Magny et al. SCIENCE
- Cell-Type Specific Features of Circular RNA Expression
- (2013) Julia Salzman et al. PLoS Genetics
- Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes
- (2012) Dennis K. Gascoigne et al. BIOINFORMATICS
- Long noncoding RNAs are rarely translated in two human cell lines
- (2012) B. Banfai et al. GENOME RESEARCH
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- Modular regulatory principles of large non-coding RNAs
- (2012) Mitchell Guttman et al. NATURE
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Peptidomic discovery of short open reading frame–encoded peptides in human cells
- (2012) Sarah A Slavoff et al. Nature Chemical Biology
- The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
- (2012) Nicholas T Ingolia et al. Nature Protocols
- The evolution of RNAs with multiple functions
- (2011) Marcel E. Dinger et al. BIOCHIMIE
- PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
- (2011) M. F. Lin et al. BIOINFORMATICS
- Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
- (2011) Nicholas T. Ingolia et al. CELL
- Cellular IRES-mediated translation
- (2011) Anton A Komar et al. CELL CYCLE
- lincRNAs act in the circuitry controlling pluripotency and differentiation
- (2011) Mitchell Guttman et al. NATURE
- Mechanism of translation initiation by Dicistroviridae IGR IRESs
- (2011) Marla I. Hertz et al. VIROLOGY
- Hundreds of putatively functional small open reading frames in Drosophila
- (2011) Emmanuel Ladoukakis et al. GENOME BIOLOGY
- The role of IREStrans-acting factors in regulating translation initiation
- (2010) Helen A. King et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control
- (2010) Yuling Jiao et al. Molecular Systems Biology
- Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
- (2010) Mitchell Guttman et al. NATURE BIOTECHNOLOGY
- Small Peptides Switch the Transcriptional Activity of Shavenbaby During Drosophila Embryogenesis
- (2010) T. Kondo et al. SCIENCE
- sORF finder: a program package to identify small open reading frames with high coding potential
- (2009) Kousuke Hanada et al. BIOINFORMATICS
- Origin, Biogenesis, and Activity of Plant MicroRNAs
- (2009) Olivier Voinnet CELL
- Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
- (2009) Mitchell Guttman et al. NATURE
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
- (2009) N. T. Ingolia et al. SCIENCE
- Splicing mediates the activity of four putative cellular internal ribosome entry sites
- (2008) B. T. Baranick et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes
- (2008) Michael F. Lin et al. PLoS Computational Biology
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started