Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling
出版年份 2016 全文链接
标题
Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling
作者
关键词
-
出版物
eLife
Volume 5, Issue -, Pages -
出版商
eLife Sciences Organisation, Ltd.
发表日期
2016-05-27
DOI
10.7554/elife.13328
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation
- (2016) David E. Weinberg et al. Cell Reports
- Novor: Real-Time Peptide de Novo Sequencing Software
- (2015) Bin Ma JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Primary transcripts of microRNAs encode regulatory peptides
- (2015) Dominique Lauressergues et al. NATURE
- A global reference for human genetic variation
- (2015) Richard A. Gibbs et al. NATURE
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation
- (2014) A. A. Bazzini et al. EMBO JOURNAL
- Proteogenomics: concepts, applications and computational strategies
- (2014) Alexey I Nesvizhskii NATURE METHODS
- The UCSC Genome Browser database: 2015 update
- (2014) Kate R. Rosenbloom et al. NUCLEIC ACIDS RESEARCH
- Impact of regulatory variation from RNA to protein
- (2014) A. Battle et al. SCIENCE
- Ribosome Profiling Reveals Pervasive Translation Outside of Annotated Protein-Coding Genes
- (2014) Nicholas T. Ingolia et al. Cell Reports
- Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins
- (2013) Mitchell Guttman et al. CELL
- Transcriptome and genome sequencing uncovers functional variation in humans
- (2013) Tuuli Lappalainen et al. NATURE
- Current status and new features of the Consensus Coding Sequence database
- (2013) Catherine M. Farrell et al. NUCLEIC ACIDS RESEARCH
- Direct Detection of Alternative Open Reading Frames Translation Products in Human Significantly Expands the Proteome
- (2013) Benoît Vanderperre et al. PLoS One
- Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures
- (2013) Z. Khan et al. SCIENCE
- Gene Expression Regulation by Upstream Open Reading Frames and Human Disease
- (2013) Cristina Barbosa et al. PLoS Genetics
- Pervasive Transcription of the Human Genome Produces Thousands of Previously Unidentified Long Intergenic Noncoding RNAs
- (2013) Matthew J. Hangauer et al. PLoS Genetics
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Observation of dually decoded regions of the human genome using ribosome profiling data
- (2012) A. M. Michel et al. GENOME RESEARCH
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution
- (2012) S. Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The GENCODE pseudogene resource
- (2012) Baikang Pei et al. GENOME BIOLOGY
- PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
- (2011) M. F. Lin et al. BIOINFORMATICS
- Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
- (2011) Nicholas T. Ingolia et al. CELL
- Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
- (2011) Jürgen Cox et al. JOURNAL OF PROTEOME RESEARCH
- The Reality of Pervasive Transcription
- (2011) Michael B. Clark et al. PLOS BIOLOGY
- Length of the ORF, position of the first AUG and the Kozak motif are important factors in potential dual-coding transcripts
- (2010) Heng Xu et al. CELL RESEARCH
- Small Peptides Switch the Transcriptional Activity of Shavenbaby During Drosophila Embryogenesis
- (2010) T. Kondo et al. SCIENCE
- Most “Dark Matter” Transcripts Are Associated With Known Genes
- (2010) Harm van Bakel et al. PLOS BIOLOGY
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
- (2009) S. E. Calvo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Priming in Systemic Plant Immunity
- (2009) Ho Won Jung et al. SCIENCE
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
- (2009) N. T. Ingolia et al. SCIENCE
- Alternative translation start sites and hidden coding potential of eukaryotic mRNAs
- (2008) Alex V. Kochetov BIOESSAYS
- Bioinformatic analysis of the CLE signaling peptide family
- (2008) Karsten Oelkers et al. BMC PLANT BIOLOGY
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
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