Translating mRNAs strongly correlate to proteins in a multivariate manner and their translation ratios are phenotype specific

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(2013) Flora Picard et al.   BMC GENOMICS

Translation Regulation as a Therapeutic Target in Cancer: Figure 1.

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tRNA concentration fine tunes protein solubility

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Long noncoding RNAs are rarely translated in two human cell lines

(2012) B. Banfai et al.   GENOME RESEARCH

Standard Guidelines for the Chromosome-Centric Human Proteome Project

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(2012) Young-Ki Paik et al.   NATURE BIOTECHNOLOGY

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(2012) Jian Kong et al.   NATURE REVIEWS GENETICS

FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads

(2012) Gong Zhang et al.   NUCLEIC ACIDS RESEARCH

A Versatile Method for Cell-Specific Profiling of Translated mRNAs in Drosophila

(2012) Amanda Thomas et al.   PLoS One

Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines

(2012) Pelin Akan et al.   Genome Medicine

Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast

(2012) Daniel H Lackner et al.   GENOME BIOLOGY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Deep proteome and transcriptome mapping of a human cancer cell line

(2011) N. Nagaraj et al.   Molecular Systems Biology

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Folding at the birth of the nascent chain: coordinating translation with co-translational folding

(2010) Gong Zhang et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line

(2010) Christine Vogel et al.   Molecular Systems Biology

Defining the transcriptome and proteome in three functionally different human cell lines

(2010) Emma Lundberg et al.   Molecular Systems Biology

Expansion of the eukaryotic proteome by alternative splicing

(2010) Timothy W. Nilsen et al.   NATURE

Different sequence signatures in the upstream regions of plant and animal tRNA genes shape distinct modes of regulation

(2010) Gong Zhang et al.   NUCLEIC ACIDS RESEARCH

Quantitative Phosphoproteomics of Proteasome Inhibition in Multiple Myeloma Cells

(2010) Feng Ge et al.   PLoS One

Subcellular proteomics revealed the epithelial-mesenchymal transition phenotype in lung cancer

(2010) Li-Ping Li et al.   PROTEOMICS

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

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Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

(2009) Joshua S Bloom et al.   BMC GENOMICS

Correlation of mRNA and protein in complex biological samples

(2009) Tobias Maier et al.   FEBS LETTERS

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Concordant Regulation of Translation and mRNA Abundance for Hundreds of Targets of a Human microRNA

(2009) David G. Hendrickson et al.   PLOS BIOLOGY

How is mRNA expression predictive for protein expression? A correlation study on human circulating monocytes

(2008) Yanfang Guo et al.   ACTA BIOCHIMICA ET BIOPHYSICA SINICA

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Proteomic Modeling for HIV-1 Infected Microglia-Astrocyte Crosstalk

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