Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of Soybean
出版年份 2019 全文链接
标题
Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of Soybean
作者
关键词
-
出版物
Frontiers in Genetics
Volume 10, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2019-11-22
DOI
10.3389/fgene.2019.01091
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Combining QTL-seq and linkage mapping to fine map a wild soybean allele characteristic of greater plant height
- (2018) Xiaoli Zhang et al. BMC GENOMICS
- Prediction of Protein Backbone Torsion Angles Using Deep Residual Inception Neural Networks
- (2018) Chao Fang et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- A One-Penny Imputed Genome from Next-Generation Reference Panels
- (2018) Brian L. Browning et al. AMERICAN JOURNAL OF HUMAN GENETICS
- A deep convolutional neural network approach for predicting phenotypes from genotypes
- (2018) Wenlong Ma et al. PLANTA
- Capsule network for protein post-translational modification site prediction
- (2018) Duolin Wang et al. BIOINFORMATICS
- Multi-environment Genomic Prediction of Plant Traits Using Deep Learners with Dense Architecture
- (2018) Abelardo Montesinos-López et al. G3-Genes Genomes Genetics
- Genome-Wide Analysis of Grain Yield Stability and Environmental Interactions in a Multiparental Soybean Population
- (2017) Alencar Xavier et al. G3-Genes Genomes Genetics
- Genetic Characterization of the Soybean Nested Association Mapping Population
- (2017) Qijian Song et al. Plant Genome
- Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
- (2017) Sheng Wang et al. PLoS Computational Biology
- Optimizing Training Population Size and Genotyping Strategy for Genomic Prediction Using Association Study Results and Pedigree Information. A Case of Study in Advanced Wheat Breeding Lines
- (2017) Fabio Cericola et al. PLoS One
- Impact of imputation methods on the amount of genetic variation captured by a single-nucleotide polymorphism panel in soybeans
- (2016) A. Xavier et al. BMC BIOINFORMATICS
- DL-ADR: a novel deep learning model for classifying genomic variants into adverse drug reactions
- (2016) Zhaohui Liang et al. BMC Medical Genomics
- Deep learning for computational biology
- (2016) Christof Angermueller et al. Molecular Systems Biology
- How far from the SNP may the causative genes be?
- (2016) Aharon Brodie et al. NUCLEIC ACIDS RESEARCH
- Assessing Predictive Properties of Genome-Wide Selection in Soybeans
- (2016) Alencar Xavier et al. G3-Genes Genomes Genetics
- A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies
- (2015) Juexin Wang et al. BMC GENOMICS
- Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean
- (2015) Silvas J Prince et al. BMC GENOMICS
- A Deep Learning Network Approach to ab initio Protein Secondary Structure Prediction
- (2015) Matt Spencer et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
- (2015) Babak Alipanahi et al. NATURE BIOTECHNOLOGY
- Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean
- (2015) Zhengkui Zhou et al. NATURE BIOTECHNOLOGY
- Predicting effects of noncoding variants with deep learning–based sequence model
- (2015) Jian Zhou et al. NATURE METHODS
- Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines
- (2015) Jennifer Spindel et al. PLoS Genetics
- A genome-wide association study of seed protein and oil content in soybean
- (2014) Eun-Young Hwang et al. BMC GENOMICS
- Analysis of flooding-responsive proteins localized in the nucleus of soybean root tips
- (2014) Setsuko Komatsu et al. MOLECULAR BIOLOGY REPORTS
- Analysis of Soybean Root Proteins Affected by Gibberellic Acid Treatment Under Flooding Stress
- (2014) Myeong Oh et al. PROTEIN AND PEPTIDE LETTERS
- Genomic selection prediction accuracy in a perennial crop: case study of oil palm (Elaeis guineensis Jacq.)
- (2014) David Cros et al. THEORETICAL AND APPLIED GENETICS
- Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding
- (2013) Trupti Joshi et al. NUCLEIC ACIDS RESEARCH
- Imputation of Unordered Markers and the Impact on Genomic Selection Accuracy
- (2013) Jessica E. Rutkoski et al. G3-Genes Genomes Genetics
- Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics
- (2012) Trupti Joshi et al. BMC GENOMICS
- Comprehensive analysis of endoplasmic reticulum-enriched fraction in root tips of soybean under flooding stress using proteomics techniques
- (2012) Setsuko Komatsu et al. Journal of Proteomics
- Comparative Genomic Analysis of Soybean Flowering Genes
- (2012) Chol-Hee Jung et al. PLoS One
- MissForest--non-parametric missing value imputation for mixed-type data
- (2011) D. J. Stekhoven et al. BIOINFORMATICS
- Genomic selection in plant breeding: from theory to practice
- (2011) J.-L. Jannink et al. Briefings in Functional Genomics
- Accuracy of genomic selection in European maize elite breeding populations
- (2011) Yusheng Zhao et al. THEORETICAL AND APPLIED GENETICS
- Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP
- (2011) Jeffrey B. Endelman Plant Genome
- From sulfur to homoglutathione: thiol metabolism in soybean
- (2010) Hankuil Yi et al. AMINO ACIDS
- MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes
- (2010) Yun Li et al. GENETIC EPIDEMIOLOGY
- Genome sequence of the palaeopolyploid soybean
- (2010) Jeremy Schmutz et al. NATURE
- Genotype imputation for genome-wide association studies
- (2010) Jonathan Marchini et al. NATURE REVIEWS GENETICS
- Genomic-Enabled Prediction Based on Molecular Markers and Pedigree Using the Bayesian Linear Regression Package in R
- (2010) Paulino Pérez et al. Plant Genome
- Markov clustering versus affinity propagation for the partitioning of protein interaction graphs
- (2009) James Vlasblom et al. BMC BIOINFORMATICS
- Accuracy of genomic selection using stochastic search variable selection in Australian Holstein Friesian dairy cattle
- (2009) KLARA L. VERBYLA et al. Genetics Research
- SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies
- (2009) Zongli Xu et al. NUCLEIC ACIDS RESEARCH
- SoyBase, the USDA-ARS soybean genetics and genomics database
- (2009) David Grant et al. NUCLEIC ACIDS RESEARCH
- A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies
- (2009) Bryan N. Howie et al. PLoS Genetics
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started