Impact of imputation methods on the amount of genetic variation captured by a single-nucleotide polymorphism panel in soybeans

Prospects and limits of marker imputation in quantitative genetic studies in European elite wheat (Triticum aestivum L.)

(2015) Sang He et al.   BMC GENOMICS

Quality Control of Genotypes Using Heritability Estimates of Gene Content at the Marker

(2015) N. S. Forneris et al.   GENETICS

Novel Methods to Optimize Genotypic Imputation for Low-Coverage, Next-Generation Sequence Data in Crop Plants

(2015) Kelly Swarts et al.   Plant Genome

Genotyping by sequencing for genomic prediction in a soybean breeding population

(2014) Diego Jarquín et al.   BMC GENOMICS

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Efficient multivariate linear mixed model algorithms for genome-wide association studies

(2014) Xiang Zhou et al.   NATURE METHODS

A New Genotype Imputation Method with Tolerance to High Missing Rate and Rare Variants

(2014) Yumei Yang et al.   PLoS One

Parametric and Nonparametric Statistical Methods for Genomic Selection of Traits with Additive and Epistatic Genetic Architectures

(2014) Réka Howard et al.   G3-Genes Genomes Genetics

Priors in Whole-Genome Regression: The Bayesian Alphabet Returns

(2013) D. Gianola   GENETICS

Comparison of different methods for imputing genome-wide marker genotypes in Swedish and Finnish Red Cattle

(2013) P. Ma et al.   JOURNAL OF DAIRY SCIENCE

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

Resource Allocation for Maximizing Prediction Accuracy and Genetic Gain of Genomic Selection in Plant Breeding: A Simulation Experiment

(2013) Aaron J. Lorenz   G3-Genes Genomes Genetics

Imputation of Unordered Markers and the Impact on Genomic Selection Accuracy

(2013) Jessica E. Rutkoski et al.   G3-Genes Genomes Genetics

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Genomic imputation and evaluation using high-density Holstein genotypes

(2012) P.M. VanRaden et al.   JOURNAL OF DAIRY SCIENCE

Extremely low-coverage sequencing and imputation increases power for genome-wide association studies

(2012) Bogdan Pasaniuc et al.   NATURE GENETICS

Genotyping-by-Sequencing for Plant Breeding and Genetics

(2012) Jesse A. Poland et al.   Plant Genome

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

(2012) Jesse Poland et al.   Plant Genome

MissForest--non-parametric missing value imputation for mixed-type data

(2011) D. J. Stekhoven et al.   BIOINFORMATICS

Effect of imputing markers from a low-density chip on the reliability of genomic breeding values in Holstein populations

(2011) R. Dassonneville et al.   JOURNAL OF DAIRY SCIENCE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

High-Resolution Detection of Identity by Descent in Unrelated Individuals

(2010) Sharon R. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

(2010) Yun Li et al.   GENETIC EPIDEMIOLOGY

Founder population-specific HapMap panel increases power in GWA studies through improved imputation accuracy and CNV tagging

(2010) I. Surakka et al.   GENOME RESEARCH

Genotype imputation for genome-wide association studies

(2010) Jonathan Marchini et al.   NATURE REVIEWS GENETICS

The Impact of Levene’s Test of Equality of Variances on Statistical Theory and Practice

(2010) Joseph L. Gastwirth et al.   STATISTICAL SCIENCE

Bi-cross-validation of the SVD and the nonnegative matrix factorization

(2009) Art B. Owen et al.   Annals of Applied Statistics

A Hidden Markov Model Combining Linkage and Linkage Disequilibrium Information for Haplotype Reconstruction and Quantitative Trait Locus Fine Mapping

(2009) T. Druet et al.   GENETICS

SNP imputation in association studies

(2009) Eran Halperin et al.   NATURE BIOTECHNOLOGY

Designing Genome-Wide Association Studies: Sample Size, Power, Imputation, and the Choice of Genotyping Chip

(2009) Chris C. A. Spencer et al.   PLoS Genetics

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

(2009) Bryan N. Howie et al.   PLoS Genetics

Association Mapping and Significance Estimation via the Coalescent

(2008) Gad Kimmel et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Technical Note: Computing Strategies in Genome-Wide Selection

(2007) A. Legarra et al.   JOURNAL OF DAIRY SCIENCE