Fungal community demonstrates stronger dispersal limitation and less network connectivity than bacterial community in sediments along a large river

Dam construction alters function and community composition of diazotrophs in riparian soils across an environmental gradient

(2019) Juan Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Forest conversion induces seasonal variation in microbial β-diversity

(2018) Shengen Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes

(2018) Yuanyuan Mo et al.   ISME Journal

Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom

(2018) Yuanyuan Xue et al.   ISME Journal

Linking soil bacterial and fungal communities to vegetation succession following agricultural abandonment

(2018) Kerong Zhang et al.   PLANT AND SOIL

Responses of fungal–bacterial community and network to organic inputs vary among different spatial habitats in soil

(2018) Wei Zheng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Contrasting responses of bacterial and fungal communities to plant litter diversity in a Mediterranean oak forest

(2018) Mathieu Santonja et al.   SOIL BIOLOGY & BIOCHEMISTRY

Divergent assemblage patterns and driving forces for bacterial and fungal communities along a glacier forefield chronosequence

(2018) Yonglei Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Co-occurrence patterns of soybean rhizosphere microbiome at a continental scale

(2018) Baogang Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Environmental factors driving fungal distribution in freshwater lake sediments across the Headwater Region of the Yellow River, China

(2018) Jianqing Tian et al.   Scientific Reports

Bacterial Communities in Riparian Sediments: A Large-Scale Longitudinal Distribution Pattern and Response to Dam Construction

(2018) Juan Chen et al.   Frontiers in Microbiology

Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River

(2018) Tang Liu et al.   Microbiome

How bacterioplankton community can go with cascade damming in the highly regulated Lancang-Mekong River Basin

(2018) Xun Wang et al.   MOLECULAR ECOLOGY

Plant-plant interactions and N fertilization shape soil bacterial and fungal communities

(2018) Qingxue Guo et al.   SOIL BIOLOGY & BIOCHEMISTRY

The diversity and biogeography of abundant and rare intertidal marine microeukaryotes explained by environment and dispersal limitation

(2017) Wenjing Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

Strong impact of anthropogenic contamination on the co-occurrence patterns of a riverine microbial community

(2017) Anyi Hu et al.   ENVIRONMENTAL MICROBIOLOGY

Environment and geographic distance differ in relative importance for determining fungal community of rhizosphere and bulk soil

(2017) Kaoping Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

Vertical and horizontal assemblage patterns of bacterial communities in a eutrophic river receiving domestic wastewater in southeast China

(2017) Yan Gao et al.   ENVIRONMENTAL POLLUTION

History matters: Heterotrophic microbial community structure and function adapt to multiple stressors

(2017) Alexander Feckler et al.   GLOBAL CHANGE BIOLOGY

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

(2017) S Emilia Hannula et al.   ISME Journal

Habitat-specific patterns and drivers of bacterial β-diversity in China’s drylands

(2017) Xiao-Bo Wang et al.   ISME Journal

Ecological Patterns Among Bacteria and Microbial Eukaryotes Derived from Network Analyses in a Low-Salinity Lake

(2017) Adriane Clark Jones et al.   MICROBIAL ECOLOGY

Fungal community reveals less dispersal limitation and potentially more connected network than that of bacteria in bamboo forest soils

(2017) Xian Xiao et al.   MOLECULAR ECOLOGY

Fertilization decreases compositional variation of paddy bacterial community across geographical gradient

(2017) Ruirui Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields

(2017) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Diversity and co-occurrence network of soil fungi are more responsive than those of bacteria to shifts in precipitation seasonality in a subtropical forest

(2017) Dan He et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

The Patterns and Drivers of Bacterial and Fungal β-Diversity in a Typical Dryland Ecosystem of Northwest China

(2017) Jianming Wang et al.   Frontiers in Microbiology

Network-based metabolic analysis and microbial community modeling

(2016) Cesar Cardona et al.   CURRENT OPINION IN MICROBIOLOGY

Bacterial community dissimilarity between the surface and subsurface soils equals horizontal differences over several kilometers in the western Tibetan Plateau

(2016) Haiyan Chu et al.   ENVIRONMENTAL MICROBIOLOGY

Patterns and drivers of soil microbial communities in Tibetan alpine and global terrestrial ecosystems

(2016) Yong-Liang Chen et al.   JOURNAL OF BIOGEOGRAPHY

Sediments and Soils Act as Reservoirs for Taxonomic and Functional Bacterial Diversity in the Upper Mississippi River

(2016) Christopher Staley et al.   MICROBIAL ECOLOGY

Crop rotations alter bacterial and fungal diversity in paddy soils across East Asia

(2016) Yuji Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns

(2016) Shuo Jiao et al.   SOIL BIOLOGY & BIOCHEMISTRY

How Should Beta-Diversity Inform Biodiversity Conservation?

(2016) Jacob B. Socolar et al.   TRENDS IN ECOLOGY & EVOLUTION

Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation

(2015) Ye Deng et al.   ENVIRONMENTAL MICROBIOLOGY

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Differences in organic matter and bacterioplankton between sections of the largest Arctic river: Mosaic or continuum?

(2015) Michail I. Gladyshev et al.   LIMNOLOGY AND OCEANOGRAPHY

Microbial community transcriptional networks are conserved in three domains at ocean basin scales

(2015) Frank O. Aylward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Catchment-scale biogeography of riverine bacterioplankton

(2014) Daniel S Read et al.   ISME Journal

Characteristics of carbonate, evaporite and silicate weathering in Huanghe River basin: A comparison among the upstream, midstream and downstream

(2014) Bai-Ling Fan et al.   JOURNAL OF ASIAN EARTH SCIENCES

Do bacterial and fungal communities assemble differently during primary succession?

(2014) S. K. Schmidt et al.   MOLECULAR ECOLOGY

Molecular approaches for biodegradation of polycyclic aromatic hydrocarbon compounds: a review

(2014) Shalini Gupta et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Bacterial community structure is indicative of chemical inputs in the Upper Mississippi River

(2014) Christopher Staley et al.   Frontiers in Microbiology

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

The biogeography of fungal communities in wetland sediments along the Changjiang River and other sites in China

(2013) Bing Wu et al.   ISME Journal

The Influence of Environmental, Biotic and Spatial Factors on Diatom Metacommunity Structure in Swedish Headwater Streams

(2013) Emma Göthe et al.   PLoS One

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Effects of large river dam regulation on bacterioplankton community structure

(2012) Clara Ruiz-González et al.   FEMS MICROBIOLOGY ECOLOGY

A decade of seasonal dynamics and co-occurrences within freshwater bacterioplankton communities from eutrophic Lake Mendota, WI, USA

(2012) Emily L Kara et al.   ISME Journal

Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils

(2012) Byron C Crump et al.   ISME Journal

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale

(2011) Tancredi Caruso et al.   ISME Journal

Spatial and temporal changes in microbial diversity of the Marmara Sea Sediments

(2011) M. Kolukirik et al.   MARINE POLLUTION BULLETIN

Inferring Ecological Processes from Taxonomic, Phylogenetic and Functional Trait β-Diversity

(2011) James C. Stegen et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Variation partitioning as a tool to distinguish between niche and neutral processes

(2010) Tyler W. Smith et al.   ECOGRAPHY

Partitioning variation in ecological communities: do the numbers add up?

(2010) Benjamin Gilbert et al.   JOURNAL OF APPLIED ECOLOGY

Development of the Bacterial Compartment Along the Danube River: a Continuum Despite Local Influences

(2010) Branko Velimirov et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

Characteristics of spatial distribution of debris flow and the effect of their sediment yield in main downstream of Jinsha River, China

(2009) Hongjiang Liu et al.   Environmental Earth Sciences

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY