Environment and geographic distance differ in relative importance for determining fungal community of rhizosphere and bulk soil

Habitat-specific patterns and drivers of bacterial β-diversity in China’s drylands

(2017) Xiao-Bo Wang et al.   ISME Journal

Salinity and macrophyte drive the biogeography of the sedimentary bacterial communities in a brackish water tropical coastal lagoon

(2017) Pratiksha Behera et al.   SCIENCE OF THE TOTAL ENVIRONMENT

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Biogeographical patterns in fungal communities from soils cultivated with sugarcane

(2016) Thiago Gumiere et al.   JOURNAL OF BIOGEOGRAPHY

Temporally Variable Geographical Distance Effects Contribute to the Assembly of Root-Associated Fungal Communities

(2016) Christopher J. Barnes et al.   Frontiers in Microbiology

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The role of stochasticity differs in the assembly of soil- and root-associated fungal communities

(2015) Sarah Beck et al.   SOIL BIOLOGY & BIOCHEMISTRY

Responses of wheat to arbuscular mycorrhizal fungi: A meta-analysis of field studies from 1975 to 2013

(2015) Elisa Pellegrino et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pyrosequencing assessment of rhizosphere fungal communities from a soybean field

(2014) Akifumi Sugiyama et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Detection of Fungal DNA in Human Body Fluids and Tissues during a Multistate Outbreak of Fungal Meningitis and Other Infections

(2013) Lalitha Gade et al.   EUKARYOTIC CELL

Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants

(2013) Thomas R Turner et al.   ISME Journal

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Biogeography of ectomycorrhizal fungi associated with alders (Alnusspp.) in relation to biotic and abiotic variables at the global scale

(2013) Sergei Põlme et al.   NEW PHYTOLOGIST

Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns

(2013) Anjuli Meiser et al.   NEW PHYTOLOGIST

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

(2013) L. Ranjard et al.   Nature Communications

The rhizosphere revisited: root microbiomics

(2013) Peter A. H. M. Bakker et al.   Frontiers in Plant Science

Linking fungal communities in roots, rhizosphere, and soil to the health status ofPisum sativum

(2012) Lihui Xu et al.   FEMS MICROBIOLOGY ECOLOGY

Global biogeography of highly diverse protistan communities in soil

(2012) Scott T Bates et al.   ISME Journal

The role of local environment and geographical distance in determining community composition of arbuscular mycorrhizal fungi at the landscape scale

(2012) Christina Hazard et al.   ISME Journal

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and distribution of arbuscular mycorrhizal fungi

(2011) Stephanie N. Kivlin et al.   SOIL BIOLOGY & BIOCHEMISTRY

PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa

(2010) Nicole Weinert et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Water use efficiency and associated traits in winter wheat cultivars in the North China Plain

(2009) Xiying Zhang et al.   AGRICULTURAL WATER MANAGEMENT

Relative roles of niche and neutral processes in structuring a soil microbial community

(2009) Alex J Dumbrell et al.   ISME Journal

Potential link between plant and fungal distributions in a dipterocarp rainforest: community and phylogenetic structure of tropical ectomycorrhizal fungi across a plant and soil ecotone

(2009) Kabir G. Peay et al.   NEW PHYTOLOGIST

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY