Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation

Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during SustainedIn SituU(VI) Reduction

(2015) Ping Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

(2015) Jizhong Zhou et al.   mBio

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

Phylogenetic and functional gene structure shifts of the oral microbiomes in periodontitis patients

(2014) Yan Li et al.   ISME Journal

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community responses to anthropogenically induced environmental change: towards a systems approach

(2013) Andrew Bissett et al.   ECOLOGY LETTERS

U(VI) Bioreduction with Emulsified Vegetable Oil as the Electron Donor – Model Application to a Field Test

(2013) Guoping Tang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

Elevated Carbon Dioxide Alters the Structure of Soil Microbial Communities

(2012) Ye Deng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Efficient statistical significance approximation for local similarity analysis of high-throughput time series data

(2012) Li C. Xia et al.   BIOINFORMATICS

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Inferring Correlation Networks from Genomic Survey Data

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A Limited Microbial Consortium Is Responsible for Extended Bioreduction of Uranium in a Contaminated Aquifer

(2011) Thomas M. Gihring et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

(2011) Li C Xia et al.   BMC Systems Biology

Acetate Availability and its Influence on Sustainable Bioremediation of Uranium-Contaminated Groundwater

(2011) Kenneth H. Williams et al.   GEOMICROBIOLOGY JOURNAL

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Detecting Novel Associations in Large Data Sets

(2011) D. N. Reshef et al.   SCIENCE

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

Microbial mediation of carbon-cycle feedbacks to climate warming

(2011) Jizhong Zhou et al.   Nature Climate Change

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2

(2010) Zhili He et al.   ECOLOGY LETTERS

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

(2010) Zhili He et al.   ISME Journal

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

The microbial ocean from genomes to biomes

(2009) Edward F. DeLong   NATURE

Microbial Communities in Contaminated Sediments, Associated with Bioremediation of Uranium to Submicromolar Levels

(2008) E. Cardenas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter

(2008) S. R. Starkenburg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial community succession during in situ uranium bioremediation: spatial similarities along controlled flow paths

(2008) Chiachi Hwang et al.   ISME Journal

Functional organization of the transcriptome in human brain

(2008) Michael C Oldham et al.   NATURE NEUROSCIENCE

Spatial scaling of functional gene diversity across various microbial taxa

(2008) J. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Geometric Interpretation of Gene Coexpression Network Analysis

(2008) Steve Horvath et al.   PLoS Computational Biology