Strong impact of anthropogenic contamination on the co-occurrence patterns of a riverine microbial community

Water-borne pharmaceuticals reduce phenotypic diversity and response capacity of natural phytoplankton communities

(2017) Francesco Pomati et al.   PLoS One

Archaeal community in a human-disturbed watershed in southeast China: diversity, distribution, and responses to environmental changes

(2016) Anyi Hu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Distribution and risk assessment of 82 pesticides in Jiulong River and estuary in South China

(2016) Senllin Zheng et al.   CHEMOSPHERE

Anthropogenic effects on bacterial diversity and function along a river-to-estuary gradient in Northwest Greece revealed by metagenomics

(2016) Alexandra Meziti et al.   ENVIRONMENTAL MICROBIOLOGY

Nutrients versus emerging contaminants–Or a dynamic match between subsidy and stress effects on stream biofilms

(2016) I. Aristi et al.   ENVIRONMENTAL POLLUTION

Shared effects of organic microcontaminants and environmental stressors on biofilms and invertebrates in impaired rivers

(2016) S. Sabater et al.   ENVIRONMENTAL POLLUTION

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Interactions between hydrology and water chemistry shape bacterioplankton biogeography across boreal freshwater networks

(2016) Juan Pablo Niño-García et al.   ISME Journal

Response of Core Microbial Consortia to Chronic Hydrocarbon Contaminations in Coastal Sediment Habitats

(2016) Mathilde Jeanbille et al.   Frontiers in Microbiology

Hidden drivers of low-dose pharmaceutical pollutant mixtures revealed by the novel GSA-QHTS screening method

(2016) I. Rodea-Palomares et al.   Science Advances

Resilience and recovery: The effect of triclosan exposure timing during development, on the structure and function of river biofilm communities

(2015) J.R. Lawrence et al.   AQUATIC TOXICOLOGY

The core populations and co-occurrence patterns of prokaryotic communities in household biogas digesters

(2015) Junpeng Rui et al.   Biotechnology for Biofuels

Bacterial diversity along a 2600 km river continuum

(2015) Domenico Savio et al.   ENVIRONMENTAL MICROBIOLOGY

Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes

(2015) Jacob A Cram et al.   ISME Journal

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Species sorting and seasonal dynamics primarily shape bacterial communities in the Upper Mississippi River

(2015) Christopher Staley et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Stream microbial diversity in response to environmental changes: review and synthesis of existing research

(2015) Lydia H. Zeglin   Frontiers in Microbiology

Association of Biodiversity with the Rates of Micropollutant Biotransformations among Full-Scale Wastewater Treatment Plant Communities

(2014) David R. Johnson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Pollution-induced community tolerance to non-steroidal anti-inflammatory drugs (NSAIDs) in fluvial biofilm communities affected by WWTP effluents

(2014) Natàlia Corcoll et al.   CHEMOSPHERE

Bisphenol A – Sources, toxicity and biotransformation

(2014) Jaromir Michałowicz   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Reconceptualising the beta diversity-environmental heterogeneity relationship in running water systems

(2014) Jani Heino et al.   FRESHWATER BIOLOGY

Spatio-temporal organization patterns in the fish assemblages of a Neotropical floodplain

(2014) Jean C. G. Ortega et al.   HYDROBIOLOGIA

Bacterial assembly and temporal dynamics in activated sludge of a full-scale municipal wastewater treatment plant

(2014) Feng Ju et al.   ISME Journal

Pharmaceuticals and personal care products in a mesoscale subtropical watershed and their application as sewage markers

(2014) Min Lv et al.   JOURNAL OF HAZARDOUS MATERIALS

Microbiological effects of sublethal levels of antibiotics

(2014) Dan I. Andersson et al.   NATURE REVIEWS MICROBIOLOGY

Fluvial network organization imprints on microbial co-occurrence networks

(2014) S. Widder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A review on the occurrence of micropollutants in the aquatic environment and their fate and removal during wastewater treatment

(2014) Yunlong Luo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Endospore-enriched sequencing approach reveals unprecedented diversity ofFirmicutesin sediments

(2014) Tina Wunderlin et al.   Environmental Microbiology Reports

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Ant mosaics occur in SE Asian oil palm plantation but not rain forest and are influenced by the presence of nest-sites and non-native species

(2013) Tom M. Fayle et al.   ECOGRAPHY

Pharmaceuticals and personal care products (PPCPs): A review on environmental contamination in China

(2013) Jin-Lin Liu et al.   ENVIRONMENT INTERNATIONAL

Core sediment bacteria drive community response to anthropogenic contamination over multiple environmental gradients

(2013) Melanie Y. Sun et al.   ENVIRONMENTAL MICROBIOLOGY

Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants

(2013) Feng Ju et al.   ENVIRONMENTAL MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Response of bacterial communities to environmental changes in a mesoscale subtropical watershed, Southeast China

(2013) Anyi Hu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Pharmaceutical Compounds and Ecosystem Function: An Emerging Research Challenge for Aquatic Ecologists

(2012) Emma J. Rosi-Marshall et al.   ECOSYSTEMS

A decade of seasonal dynamics and co-occurrences within freshwater bacterioplankton communities from eutrophic Lake Mendota, WI, USA

(2012) Emily L Kara et al.   ISME Journal

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Nutrient enrichment and N:P ratio decline in a coastal bay–river system in southeast China: The need for a dual nutrient (N and P) management strategy

(2012) Nengwang Chen et al.   OCEAN & COASTAL MANAGEMENT

Sub-inhibitory concentrations of different pharmaceutical products affect the meta-transcriptome of river biofilm communities cultivated in rotating annular reactors

(2012) Etienne Yergeau et al.   Environmental Microbiology Reports

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient

(2011) Caroline S Fortunato et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Environmental distribution of prokaryotic taxa

(2010) Javier Tamames et al.   BMC MICROBIOLOGY

A review of personal care products in the aquatic environment: Environmental concentrations and toxicity

(2010) John M. Brausch et al.   CHEMOSPHERE

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

Global threats to human water security and river biodiversity

(2010) C. J. Vörösmarty et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

What makes a species central in a cleaning mutualism network?

(2010) Cristina Sazima et al.   OIKOS

The seasonal structure of microbial communities in the Western English Channel

(2009) Jack A. Gilbert et al.   ENVIRONMENTAL MICROBIOLOGY

Anthropogenic disturbance affects the structure of bacterial communities

(2009) Duane Ager et al.   ENVIRONMENTAL MICROBIOLOGY

Circumpolar synchrony in big river bacterioplankton

(2009) Byron C. Crump et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A working guide to boosted regression trees

(2008) J. Elith et al.   JOURNAL OF ANIMAL ECOLOGY