An identification protocol for ESBL-producing Gram-negative bacteria bloodstream infections using a MinION nanopore sequencer

DNA extraction from primary liquid blood cultures for bloodstream infection diagnosis using whole genome sequencing

(2018) Luke W. Anson et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Rapid identification of pathogens from positive blood culture bottles with the MinION nanopore sequencer

(2018) Sae Ashikawa et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Illumina short-read and MinION long-read WGS to characterize the molecular epidemiology of an NDM-1 Serratia marcescens outbreak in Romania

(2017) H T T Phan et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Use of the Oxford Nanopore MinION sequencer for MLST genotyping of vancomycin-resistant enterococci

(2017) N. Tarumoto et al.   JOURNAL OF HOSPITAL INFECTION

MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach

(2017) Bonnie L. Brown et al.   GigaScience

A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer

(2017) Satomi Mitsuhashi et al.   Scientific Reports

Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing

(2016) K. Schmidt et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinIONTM sequencing

(2016) Minh Duc Cao et al.   GigaScience

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

(2016) Alfonso Benítez-Páez et al.   GigaScience

Oxford Nanopore MinION Sequencing and Genome Assembly

(2016) Hengyun Lu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Discovery of novel S. aureus autolysins and molecular engineering to enhance bacteriolytic activity

(2015) Daniel C. Osipovitch et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Improved rapid and efficient method for Staphylococcus aureus DNA extraction from milk for identification of mastitis pathogens

(2015) Hirotaka UNNO et al.   JOURNAL OF VETERINARY MEDICAL SCIENCE

Improved data analysis for the MinION nanopore sequencer

(2015) Miten Jain et al.   NATURE METHODS

Clinical and Molecular Epidemiology of Extended-Spectrum Beta-Lactamase-Producing Klebsiella spp.: A Systematic Review and Meta-Analyses

(2015) Tirza C. Hendrik et al.   PLoS One

Risk factors for acquisition of carbapenem resistant Enterobacteriaceae in an acute tertiary care hospital in Singapore

(2015) Moi Lin Ling et al.   Antimicrobial Resistance and Infection Control

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer

(2015) Andy Kilianski et al.   GigaScience

Rapid Detection of  -Lactamase-Hydrolyzing Extended-Spectrum Cephalosporins in Enterobacteriaceae by Use of the New Chromogenic  Lacta Test

(2014) M. I. Morosini et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Klebsiella pneumoniae Bloodstream Infection

(2014) Nicolò Girometti et al.   MEDICINE

Antimicrobial Prophylaxis for Children with Vesicoureteral Reflux

(2014)   NEW ENGLAND JOURNAL OF MEDICINE

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Evaluation of the  Lacta Test, a Rapid Test Detecting Resistance to Third-Generation Cephalosporins in Clinical Strains of Enterobacteriaceae

(2013) A. Renvoise et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Clinical epidemiology of the global expansion of Klebsiella pneumoniae carbapenemases

(2013) L Silvia Munoz-Price et al.   LANCET INFECTIOUS DISEASES

Rapid Detection of Extended-Spectrum- -Lactamase-Producing Enterobacteriaceae

(2012) P. Nordmann et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Evaluation of Methods for the Extraction and Purification of DNA from the Human Microbiome

(2012) Sanqing Yuan et al.   PLoS One

Comparison of the MALDI Biotyper System Using Sepsityper Specimen Processing to Routine Microbiological Methods for Identification of Bacteria from Positive Blood Culture Bottles

(2011) B. W. Buchan et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Identification of Bacteria in Blood Culture Broths Using Matrix-Assisted Laser Desorption-Ionization Sepsityper™ and Time of Flight Mass Spectrometry

(2011) Jen Kok et al.   PLoS One