Rapid identification of pathogens from positive blood culture bottles with the MinION nanopore sequencer

DNA extraction from primary liquid blood cultures for bloodstream infection diagnosis using whole genome sequencing

(2018) Luke W. Anson et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Rapid identification of mycobacteria from positive MGIT broths of primary cultures by MALDI-TOF mass spectrometry

(2018) Tsi-Shu Huang et al.   PLoS One

Use of the Oxford Nanopore MinION sequencer for MLST genotyping of vancomycin-resistant enterococci

(2017) N. Tarumoto et al.   JOURNAL OF HOSPITAL INFECTION

Impact of rapid identification of positive blood cultures using the Verigene system on antibiotic prescriptions: A prospective study of community-onset bacteremia in a tertiary hospital in Japan

(2017) Kayoko Hayakawa et al.   PLoS One

A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer

(2017) Satomi Mitsuhashi et al.   Scientific Reports

Enrichment of bacterial DNA for the diagnosis of blood stream infections

(2016) Ngo Tat Trung et al.   BMC INFECTIOUS DISEASES

Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing

(2016) K. Schmidt et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinIONTM sequencing

(2016) Minh Duc Cao et al.   GigaScience

Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer

(2016) Alfonso Benítez-Páez et al.   GigaScience

Improved rapid and efficient method for Staphylococcus aureus DNA extraction from milk for identification of mastitis pathogens

(2015) Hirotaka UNNO et al.   JOURNAL OF VETERINARY MEDICAL SCIENCE

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer

(2015) Andy Kilianski et al.   GigaScience

Identification of Microorganisms by FilmArray and Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Prior to Positivity in the Blood Culture System

(2014) Mohammed Almuhayawi et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Overall burden of bloodstream infection and nosocomial bloodstream infection in North America and Europe

(2013) M. Goto et al.   CLINICAL MICROBIOLOGY AND INFECTION

Mixed bloodstream infections involving bacteria and Candida spp.

(2013) Emilio Bouza et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Clinical Evaluation of the FilmArray Blood Culture Identification Panel in Identification of Bacteria and Yeasts from Positive Blood Culture Bottles

(2013) O. Altun et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Rapid and reliable MALDI-TOF mass spectrometry identification of Candida non-albicans isolates from bloodstream infections

(2013) Giovanna Pulcrano et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Rapid identification of pathogens from positive blood cultures by multiplex polymerase chain reaction using the FilmArray system

(2012) Anne J. Blaschke et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Evaluation of a Polymerase Chain Reaction Assay for Pathogen Detection in Septic Patients under Routine Condition: An Observational Study

(2012) Frank Bloos et al.   PLoS One

Rapid Identification of Bacteria from Positive Blood Culture Bottles by Use of Matrix-Assisted Laser Desorption-Ionization Time of Flight Mass Spectrometry Fingerprinting

(2010) M. Christner et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Comparison of Two Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Methods with Conventional Phenotypic Identification for Routine Identification of Bacteria to the Species Level

(2010) A. Cherkaoui et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Rapid Identification of Bacteria in Positive Blood Culture Broths by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry

(2009) L. G. Stevenson et al.   JOURNAL OF CLINICAL MICROBIOLOGY