Metabolic Modeling of Cystic Fibrosis Airway Communities Predicts Mechanisms of Pathogen Dominance
出版年份 2019 全文链接
标题
Metabolic Modeling of Cystic Fibrosis Airway Communities Predicts Mechanisms of Pathogen Dominance
作者
关键词
-
出版物
mSystems
Volume 4, Issue 2, Pages -
出版商
American Society for Microbiology
发表日期
2019-04-22
DOI
10.1128/msystems.00026-19
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Microbiome networks and change-point analysis reveal key community changes associated with cystic fibrosis pulmonary exacerbations
- (2019) Mehdi Layeghifard et al. npj Biofilms and Microbiomes
- Metagenome – Inferred bacterial replication rates in cystic fibrosis airways
- (2019) Katarzyna Pienkowska et al. Journal of Cystic Fibrosis
- Modeling metabolism of the human gut microbiome
- (2018) Stefanía Magnúsdóttir et al. CURRENT OPINION IN BIOTECHNOLOGY
- Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa-Derived Metabolites
- (2018) Bei Gao et al. mSphere
- Methods for automated genome-scale metabolic model reconstruction
- (2018) José P. Faria et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- The Pseudomonas aeruginosa Complement of Lactate Dehydrogenases Enables Use of D- and L-Lactate and Metabolic Cross-Feeding
- (2018) Yu-Cheng Lin et al. mBio
- High-resolution in situ transcriptomics of Pseudomonas aeruginosa unveils genotype independent patho-phenotypes in cystic fibrosis lungs
- (2018) Elio Rossi et al. Nature Communications
- Suboptimal community growth mediated through metabolite crossfeeding promotes species diversity in the gut microbiota
- (2018) Michael A. Henson et al. PLoS Computational Biology
- Cystic Fibrosis Airway Microbiome: Overturning the Old, Opening the Way for the New
- (2017) George A. O'Toole JOURNAL OF BACTERIOLOGY
- Reconstruction of the metabolic network of Pseudomonas aeruginosa to interrogate virulence factor synthesis
- (2017) Jennifer A. Bartell et al. Nature Communications
- SteadyCom: Predicting microbial abundances while ensuring community stability
- (2017) Siu Hung Joshua Chan et al. PLoS Computational Biology
- Modeling Metabolic Interactions in a Consortium of the Infant Gut Microbiome
- (2017) Francisco Pinto et al. Frontiers in Microbiology
- Metabolomic biomarkers predictive of early structural lung disease in cystic fibrosis
- (2016) Charles R. Esther et al. EUROPEAN RESPIRATORY JOURNAL
- Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
- (2016) Stefanía Magnúsdóttir et al. NATURE BIOTECHNOLOGY
- Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease
- (2016) Deborah A. Hogan et al. PLoS One
- Comparative genome-scale modelling ofStaphylococcus aureusstrains identifies strain-specific metabolic capabilities linked to pathogenicity
- (2016) Emanuele Bosi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evidence and Role for Bacterial Mucin Degradation in Cystic Fibrosis Airway Disease
- (2016) Jeffrey M. Flynn et al. PLoS Pathogens
- Metabolic Network Modeling of Microbial Interactions in Natural and Engineered Environmental Systems
- (2016) Octavio Perez-Garcia et al. Frontiers in Microbiology
- From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model
- (2016) Daniel A. Cuevas et al. Frontiers in Microbiology
- Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease
- (2016) Robert A. Quinn et al. PeerJ
- Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation
- (2016) Cecilia Noecker et al. mSystems
- Ecological networking of cystic fibrosis lung infections
- (2016) Robert A Quinn et al. npj Biofilms and Microbiomes
- Anoxic Conditions Promote Species-Specific Mutualism between Gut MicrobesIn Silico
- (2015) Almut Heinken et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Pseudomonas aeruginosa and Achromobacter sp. Clonal Selection Leads to Successive Waves of Contamination of Water in Dental Care Units
- (2015) Fatima Abdouchakour et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome
- (2015) Saeed Shoaie et al. Cell Metabolism
- Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome
- (2015) Robert A Quinn et al. ISME Journal
- Coculture of Staphylococcus aureus with Pseudomonas aeruginosa Drives S. aureus towards Fermentative Metabolism and Reduced Viability in a Cystic Fibrosis Model
- (2015) Laura M. Filkins et al. JOURNAL OF BACTERIOLOGY
- Essential genome ofPseudomonas aeruginosain cystic fibrosis sputum
- (2015) Keith H. Turner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Analysis of the chronic wound microbiota of 2,963 patients by 16S rDNA pyrosequencing
- (2015) Randall D. Wolcott et al. WOUND REPAIR AND REGENERATION
- Pediatric Cystic Fibrosis Sputum Can Be Chemically Dynamic, Anoxic, and Extremely Reduced Due to Hydrogen Sulfide Formation
- (2015) Elise S. Cowley et al. mBio
- Cystic Fibrosis Lung Infections: Polymicrobial, Complex, and Hard to Treat
- (2015) Laura M. Filkins et al. PLoS Pathogens
- Systems modeling approaches for microbial community studies: from metagenomics to inference of the community structure
- (2015) Mark Hanemaaijer et al. Frontiers in Microbiology
- The metabolomics of airway diseases, including COPD, asthma and cystic fibrosis
- (2014) B. Fatemeh Nobakht M. Gh. et al. BIOMARKERS
- Oral Streptococci and Nitrite-Mediated Interference of Pseudomonas aeruginosa
- (2014) Jessica A. Scoffield et al. INFECTION AND IMMUNITY
- Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation
- (2014) Katrine L Whiteson et al. ISME Journal
- An integrated catalog of reference genes in the human gut microbiome
- (2014) Junhua Li et al. NATURE BIOTECHNOLOGY
- Biogeochemical Forces Shape the Composition and Physiology of Polymicrobial Communities in the Cystic Fibrosis Lung
- (2014) R. A. Quinn et al. mBio
- The microbiome in pediatric cystic fibrosis patients: the role of shared environment suggests a window of intervention
- (2014) Thomas H Hampton et al. Microbiome
- Comparative genome characterization of Achromobacter members reveals potential genetic determinants facilitating the adaptation to a pathogenic lifestyle
- (2013) Xiangyang Li et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Comparative Metabolic Systems Analysis of Pathogenic Burkholderia
- (2013) J. A. Bartell et al. JOURNAL OF BACTERIOLOGY
- Purification and Characterization of Biofilm-Associated EPS Exopolysaccharides from ESKAPE Organisms and Other Pathogens
- (2013) Patrick M. Bales et al. PLoS One
- Community Flux Balance Analysis for Microbial Consortia at Balanced Growth
- (2013) Ruchir A. Khandelwal et al. PLoS One
- Causal Inference Regarding Infectious Aetiology of Chronic Conditions: A Systematic Review
- (2013) Sofia Orrskog et al. PLoS One
- Microbiota and Metabolite Profiling Reveal Specific Alterations in Bacterial Community Structure and Environment in the Cystic Fibrosis Airway during Exacerbation
- (2013) Kate B. Twomey et al. PLoS One
- Community surveillance enhances Pseudomonas aeruginosa virulence during polymicrobial infection
- (2013) A. Korgaonkar et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules
- (2013) R. Levy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Understanding the interactions between bacteria in the human gut through metabolic modeling
- (2013) Saeed Shoaie et al. Scientific Reports
- The Cystic Fibrosis Airway Microbiome
- (2013) S. V. Lynch et al. Cold Spring Harbor Perspectives in Medicine
- Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation
- (2013) Katherine E Price et al. Microbiome
- Prevalence of Streptococci and Increased Polymicrobial Diversity Associated with Cystic Fibrosis Patient Stability
- (2012) L. M. Filkins et al. JOURNAL OF BACTERIOLOGY
- Analyses of the Microbial Diversity across the Human Microbiome
- (2012) Kelvin Li et al. PLoS One
- Novel Targets of the CbrAB/Crc Carbon Catabolite Control System Revealed by Transcript Abundance in Pseudomonas aeruginosa
- (2012) Elisabeth Sonnleitner et al. PLoS One
- OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities
- (2012) Ali R. Zomorrodi et al. PLoS Computational Biology
- Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction
- (2011) Kechi Fang et al. BMC Systems Biology
- Achromobacter xylosoxidans respiratory tract infection in cystic fibrosis patients
- (2011) A. Lambiase et al. EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES
- Competitive and cooperative metabolic interactions in bacterial communities
- (2011) Shiri Freilich et al. Nature Communications
- The Changing Microbial Epidemiology in Cystic Fibrosis
- (2010) J. J. LiPuma CLINICAL MICROBIOLOGY REVIEWS
- Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa
- (2010) Vanja Klepac-Ceraj et al. ENVIRONMENTAL MICROBIOLOGY
- Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities
- (2010) Christopher J van der Gast et al. ISME Journal
- Metabolic Network Analysis of Pseudomonas aeruginosa during Chronic Cystic Fibrosis Lung Infection
- (2010) M. A. Oberhardt et al. JOURNAL OF BACTERIOLOGY
- Airway Microbiota and Pathogen Abundance in Age-Stratified Cystic Fibrosis Patients
- (2010) Michael J. Cox et al. PLoS One
- Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation
- (2009) Adam L. Meadows et al. METABOLIC ENGINEERING
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