OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities
出版年份 2012 全文链接
标题
OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities
作者
关键词
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出版物
PLoS Computational Biology
Volume 8, Issue 2, Pages e1002363
出版商
Public Library of Science (PLoS)
发表日期
2012-02-03
DOI
10.1371/journal.pcbi.1002363
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology
- (2011) Aarash Bordbar et al. BMC Systems Biology
- A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities
- (2011) Eleftheria Tzamali et al. BMC Systems Biology
- Social interaction in synthetic and natural microbial communities
- (2011) J. B. Xavier Molecular Systems Biology
- Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing
- (2010) Fahimeh Salimi et al. Biotechnology Journal
- Cooperation and cheating in microbial exoenzyme production - Theoretical analysis for biotechnological applications
- (2010) Stefan Schuster et al. Biotechnology Journal
- Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments
- (2010) Lance D Miller et al. BMC MICROBIOLOGY
- Further developments towards a genome-scale metabolic model of yeast
- (2010) Paul D Dobson et al. BMC Systems Biology
- The biomass objective function
- (2010) Adam M Feist et al. CURRENT OPINION IN MICROBIOLOGY
- Biosystems analysis and engineering of microbial consortia for industrial biotechnology
- (2010) Wael Sabra et al. ENGINEERING IN LIFE SCIENCES
- Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments
- (2010) Kai Zhuang et al. ISME Journal
- Metabolic response of Geobacter sulfurreducens towards electron donor/acceptor variation
- (2010) Tae Hoon Yang et al. Microbial Cell Factories
- Cooperation and Hamilton's rule in a simple synthetic microbial system
- (2010) John S Chuang et al. Molecular Systems Biology
- Emergent cooperation in microbial metabolism
- (2010) Edwin H Wintermute et al. Molecular Systems Biology
- Large-scale in silico modeling of metabolic interactions between cell types in the human brain
- (2010) Nathan E Lewis et al. NATURE BIOTECHNOLOGY
- High-throughput generation, optimization and analysis of genome-scale metabolic models
- (2010) Christopher S Henry et al. NATURE BIOTECHNOLOGY
- The large-scale organization of the bacterial network of ecological co-occurrence interactions
- (2010) Shiri Freilich et al. NUCLEIC ACIDS RESEARCH
- Evolutionary game theory: Theoretical concepts and applications to microbial communities
- (2010) Erwin Frey PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS
- Emergence of Spatial Structure in Cell Groups and the Evolution of Cooperation
- (2010) Carey D. Nadell et al. PLoS Computational Biology
- Environments that Induce Synthetic Microbial Ecosystems
- (2010) Niels Klitgord et al. PLoS Computational Biology
- OptForce: An Optimization Procedure for Identifying All Genetic Manipulations Leading to Targeted Overproductions
- (2010) Sridhar Ranganathan et al. PLoS Computational Biology
- Metabolic modelling of syntrophic-like growth of a 1,3-propanediol producer, Clostridium butyricum, and a methanogenic archeon, Methanosarcina mazei, under anaerobic conditions
- (2009) Marcin Bizukojc et al. BIOPROCESS AND BIOSYSTEMS ENGINEERING
- In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study
- (2009) Reed Taffs et al. BMC Systems Biology
- Topological Signatures of Species Interactions in Metabolic Networks
- (2009) Elhanan Borenstein et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Genome-scale gene/reaction essentiality and synthetic lethality analysis
- (2009) Patrick F Suthers et al. Molecular Systems Biology
- The microbial ocean from genomes to biomes
- (2009) Edward F. DeLong NATURE
- Snowdrift game dynamics and facultative cheating in yeast
- (2009) Jeff Gore et al. NATURE
- Microbial community structure and its functional implications
- (2009) Jed A. Fuhrman NATURE
- Simpson's Paradox in a Synthetic Microbial System
- (2009) J. S. Chuang et al. SCIENCE
- GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions
- (2009) Vinay Satish Kumar et al. PLoS Computational Biology
- Metabolic-network-driven analysis of bacterial ecological strategies
- (2009) Shiri Freilich et al. GENOME BIOLOGY
- Syntrophic Growth on Formate: a New Microbial Niche in Anoxic Environments
- (2008) J. Dolfing et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Identification of cellular objective for elucidating the physiological state of plasmid-bearingEscherichia coliusing genome-scalein silicoanalysis
- (2008) Dave Siak-Wei Ow et al. BIOTECHNOLOGY PROGRESS
- Predicting biological system objectives de novo from internal state measurements
- (2008) Erwin P Gianchandani et al. BMC BIOINFORMATICS
- Metabolic modelling of polyhydroxyalkanoate copolymers production by mixed microbial cultures
- (2008) João ML Dias et al. BMC Systems Biology
- Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat
- (2008) Anne-Soisig Steunou et al. ISME Journal
- Complementary cooperation between two syntrophic bacteria in pesticide degradation
- (2008) Chie Katsuyama et al. JOURNAL OF THEORETICAL BIOLOGY
- The convergence of carbohydrate active gene repertoires in human gut microbes
- (2008) C. A. Lozupone et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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