Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
出版年份 2016 全文链接
标题
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
作者
关键词
-
出版物
NATURE BIOTECHNOLOGY
Volume 35, Issue 1, Pages 81-89
出版商
Springer Nature
发表日期
2016-11-29
DOI
10.1038/nbt.3703
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Conditions for duality between fluxes and concentrations in biochemical networks
- (2016) Ronan M.T. Fleming et al. JOURNAL OF THEORETICAL BIOLOGY
- Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis
- (2016) Dmitry A. Ravcheev et al. Frontiers in Microbiology
- Anoxic Conditions Promote Species-Specific Mutualism between Gut MicrobesIn Silico
- (2015) Almut Heinken et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The influence of diet on the gut microbiota and its consequences for health
- (2015) Joël Doré et al. CURRENT OPINION IN BIOTECHNOLOGY
- Database resources of the National Center for Biotechnology Information
- (2015) NUCLEIC ACIDS RESEARCH
- The ecology of the microbiome: Networks, competition, and stability
- (2015) K. Z. Coyte et al. SCIENCE
- Systems biology of host-microbe metabolomics
- (2015) Almut Heinken et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- Compact graphical representation of phylogenetic data and metadata with GraPhlAn
- (2015) Francesco Asnicar et al. PeerJ
- Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires
- (2015) Eugen Bauer et al. Microbiome
- Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes
- (2015) Stefanía Magnúsdóttir et al. Frontiers in Genetics
- Synthetic microbial communities
- (2014) Tobias Großkopf et al. CURRENT OPINION IN MICROBIOLOGY
- Functional Metabolic Map of Faecalibacterium prausnitzii, a Beneficial Human Gut Microbe
- (2014) A. Heinken et al. JOURNAL OF BACTERIOLOGY
- Recent trends in the metabolism and cell biology of vitamin K with special reference to vitamin K cycling and MK-4 biosynthesis
- (2014) Martin J. Shearer et al. JOURNAL OF LIPID RESEARCH
- Towards a better understanding of Lactobacillus rhamnosus GG - host interactions
- (2014) Marijke E Segers et al. Microbial Cell Factories
- Functional and phylogenetic assembly of microbial communities in the human microbiome
- (2014) Afrah Shafquat et al. TRENDS IN MICROBIOLOGY
- Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data
- (2014) M. Vital et al. mBio
- Prediction and quantification of bioactive microbiota metabolites in the mouse gut
- (2014) Gautham V. Sridharan et al. Nature Communications
- Fast Reconstruction of Compact Context-Specific Metabolic Network Models
- (2014) Nikos Vlassis et al. PLoS Computational Biology
- Emergent Biosynthetic Capacity in Simple Microbial Communities
- (2014) Hsuan-Chao Chiu et al. PLoS Computational Biology
- GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data
- (2013) Brian J. Schmidt et al. BIOINFORMATICS
- Transferring functional annotations of membrane transporters on the basis of sequence similarity and sequence motifs
- (2013) Ahmad Barghash et al. BMC BIOINFORMATICS
- Towards a predictive systems-level model of the human microbiome: progress, challenges, and opportunities
- (2013) Sharon Greenblum et al. CURRENT OPINION IN BIOTECHNOLOGY
- Software platforms to facilitate reconstructing genome-scale metabolic networks
- (2013) Joshua J. Hamilton et al. ENVIRONMENTAL MICROBIOLOGY
- Dysbiosis in inflammatory bowel diseases: the oxygen hypothesis
- (2013) Lionel Rigottier-Gois ISME Journal
- Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli
- (2013) D. McCloskey et al. Molecular Systems Biology
- A community-driven global reconstruction of human metabolism
- (2013) Ines Thiele et al. NATURE BIOTECHNOLOGY
- DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements: Table 1.
- (2013) Hao Luo et al. NUCLEIC ACIDS RESEARCH
- Metabolic Proximity in the Order of Colonization of a Microbial Community
- (2013) Varun Mazumdar et al. PLoS One
- Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome
- (2013) Nathan P. McNulty et al. PLOS BIOLOGY
- Consistent Estimation of Gibbs Energy Using Component Contributions
- (2013) Elad Noor et al. PLoS Computational Biology
- The Impact of the Gut Microbiota on Human Health: An Integrative View
- (2012) Jose C. Clemente et al. CELL
- Role of oxygen gradients in shaping redox relationships between the human intestine and its microbiota
- (2012) Michael Graham Espey FREE RADICAL BIOLOGY AND MEDICINE
- Effect of extraction method on quality of orange juice: hand-squeezed, commercial-fresh squeezed and processed
- (2012) Elizabeth A Baldwin et al. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE
- A framework for human microbiome research
- (2012) NATURE
- Gut microbiota composition correlates with diet and health in the elderly
- (2012) Marcus J. Claesson et al. NATURE
- The gut microbiota in IBD
- (2012) Chaysavanh Manichanh et al. Nature Reviews Gastroenterology & Hepatology
- Microbial interactions: from networks to models
- (2012) Karoline Faust et al. NATURE REVIEWS MICROBIOLOGY
- SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models
- (2012) Ramy K. Aziz et al. PLoS One
- Microbial Co-occurrence Relationships in the Human Microbiome
- (2012) Karoline Faust et al. PLoS Computational Biology
- rBioNet: A COBRA toolbox extension for reconstructing high-quality biochemical networks
- (2011) S. G. Thorleifsson et al. BIOINFORMATICS
- The evolution of metabolic networks of E. coli
- (2011) David J Baumler et al. BMC Systems Biology
- A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2
- (2011) Ines Thiele et al. BMC Systems Biology
- Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0
- (2011) Jan Schellenberger et al. Nature Protocols
- Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
- (2011) S. Greenblum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Computationally efficient flux variability analysis
- (2010) Steinn Gudmundsson et al. BMC BIOINFORMATICS
- The biomass objective function
- (2010) Adam M Feist et al. CURRENT OPINION IN MICROBIOLOGY
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- High-throughput generation, optimization and analysis of genome-scale metabolic models
- (2010) Christopher S Henry et al. NATURE BIOTECHNOLOGY
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- A protocol for generating a high-quality genome-scale metabolic reconstruction
- (2010) Ines Thiele et al. Nature Protocols
- MetaboliteDetector: Comprehensive Analysis Tool for Targeted and Nontargeted GC/MS Based Metabolome Analysis
- (2009) Karsten Hiller et al. ANALYTICAL CHEMISTRY
- Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine
- (2009) Petra Louis et al. FEMS MICROBIOLOGY LETTERS
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- Comparative genomics and functional annotation of bacterial transporters
- (2007) Mikhail S. Gelfand et al. Physics of Life Reviews
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