Systematic Review of Gut Microbiota and Major Depression

Antibiotic-induced microbiota perturbation causes gut endocannabinoidome changes, hippocampal neuroglial reorganization and depression in mice

(2018) F. Guida et al.   BRAIN BEHAVIOR AND IMMUNITY

Molecular dynamics insights into the structure, function, and substrate binding mechanism of mucin desulfating sulfatase of gut microbe Bacteroides fragilis

(2018) Ardhendu Bhusan Praharaj et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Overview and systematic review of studies of microbiome in schizophrenia and bipolar disorder

(2018) Tanya T. Nguyen et al.   JOURNAL OF PSYCHIATRIC RESEARCH

Comparative metaproteomics analysis shows altered fecal microbiota signatures in patients with major depressive disorder

(2018) Zhi Chen et al.   NEUROREPORT

Carboxythiazole is a key microbial nutrient currency and critical component of thiamin biosynthesis

(2018) Ryan W. Paerl et al.   Scientific Reports

Alterations of oral microbiota distinguish children with autism spectrum disorders from healthy controls

(2018) Yanan Qiao et al.   Scientific Reports

Use of dietary indices to control for diet in human gut microbiota studies

(2018) Ruth C. E. Bowyer et al.   Microbiome

American Gut: an Open Platform for Citizen Science Microbiome Research

(2018) Daniel McDonald et al.   mSystems

Comparison of Small Bowel and Colonic Mucosal Permeability in Ulcerative/Microscopic Colitis, Irritable Bowel Syndrome-Diarrhea, and Healthy Controls by Urinary Saccharide Excretion Measurements

(2018) Archana Rao et al.   GASTROENTEROLOGY

Extensive impact of non-antibiotic drugs on human gut bacteria

(2018) Lisa Maier et al.   NATURE

Regional variation limits applications of healthy gut microbiome reference ranges and disease models

(2018) Yan He et al.   NATURE MEDICINE

Probiotic Bifidobacterium longum NCC3001 Reduces Depression Scores and Alters Brain Activity: A Pilot Study in Patients With Irritable Bowel Syndrome

(2017) Maria Ines Pinto-Sanchez et al.   GASTROENTEROLOGY

Association of Inflammatory Bowel Disease (IBD) with Depressive Symptoms in the United States Population and Independent Predictors of Depressive Symptoms in an IBD Population: A NHANES Study

(2017) Sanjay Bhandari et al.   Gut and Liver

De novo mutations implicate novel genes in systemic lupus erythematosus

(2017) Venu Pullabhatla et al.   HUMAN MOLECULAR GENETICS

Prevotella and Klebsiella proportions in fecal microbial communities are potential characteristic parameters for patients with major depressive disorder

(2017) Ping Lin et al.   JOURNAL OF AFFECTIVE DISORDERS

A Bacteroidetes locus dedicated to fungal 1,6-β-glucan degradation: Unique substrate conformation drives specificity of the key endo-1,6-β-glucanase

(2017) Max J. Temple et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2

(2017) Ahmad Ali-Ahmad et al.   JOURNAL OF STRUCTURAL BIOLOGY

An Integrated View of the Effects of Wine Polyphenols and Their Relevant Metabolites on Gut and Host Health

(2017) Carolina Cueva et al.   MOLECULES

Complex pectin metabolism by gut bacteria reveals novel catalytic functions

(2017) Didier Ndeh et al.   NATURE

Shotgun metagenomics, from sampling to analysis

(2017) Christopher Quince et al.   NATURE BIOTECHNOLOGY

Interaction Between Atypical Antipsychotics and the Gut Microbiome in a Bipolar Disease Cohort

(2017) Stephanie A. Flowers et al.   PHARMACOTHERAPY

Elevated salivary IgA, decreased anxiety, and an altered oral microbiota are associated with active participation on an undergraduate athletic team

(2017) Ashley L. Lamb et al.   PHYSIOLOGY & BEHAVIOR

Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens

(2017) Julie M. Grondin et al.   PLoS One

Brain Structure and Response to Emotional Stimuli as Related to Gut Microbial Profiles in Healthy Women

(2017) Kirsten Tillisch et al.   PSYCHOSOMATIC MEDICINE

Influence of gut microbiota on neuropsychiatric disorders

(2017) María Carmen Cenit et al.   WORLD JOURNAL OF GASTROENTEROLOGY

In Silico Analysis of Putrefaction Pathways in Bacteria and Its Implication in Colorectal Cancer

(2017) Harrisham Kaur et al.   Frontiers in Microbiology

Thiamine Acquisition Strategies Impact Metabolism and Competition in the Gut Microbe Bacteroides thetaiotaomicron

(2017) Zachary A. Costliow et al.   mSystems

Changes in salivary microbiota increase volatile sulfur compounds production in healthy male subjects with academic-related chronic stress

(2017) Bruno Dias Nani et al.   PLoS One

GABA production and structure of gadB / gadC genes in Lactobacillus and Bifidobacterium strains from human microbiota

(2016) R.A. Yunes et al.   ANAEROBE

Alteration of behavior and monoamine levels attributable to Lactobacillus plantarum PS128 in germ-free mice

(2016) Wei-Hsien Liu et al.   BEHAVIOURAL BRAIN RESEARCH

Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis

(2016) Jordane Despres et al.   BMC GENOMICS

From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites

(2016) Ara Koh et al.   CELL

Possible association of Bifidobacterium and Lactobacillus in the gut microbiota of patients with major depressive disorder

(2016) Emiko Aizawa et al.   JOURNAL OF AFFECTIVE DISORDERS

Crystal Structure and Activity Studies of the C11 Cysteine Peptidase fromParabacteroides merdaein the Human Gut Microbiome

(2016) Karen McLuskey et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transferring the blues: Depression-associated gut microbiota induces neurobehavioural changes in the rat

(2016) John R. Kelly et al.   JOURNAL OF PSYCHIATRIC RESEARCH

Functional characterization of a gene locus from an uncultured gutBacteroidesconferring xylo-oligosaccharides utilization toEscherichia coli

(2016) Alexandra S. Tauzin et al.   MOLECULAR MICROBIOLOGY

Gut microbiome remodeling induces depressive-like behaviors through a pathway mediated by the host’s metabolism

(2016) P Zheng et al.   MOLECULAR PSYCHIATRY

The evolution of cooperation within the gut microbiota

(2016) Seth Rakoff-Nahoum et al.   NATURE

The potential use of histone deacetylase inhibitors in the treatment of depression

(2016) Manabu Fuchikami et al.   PROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

(2016) Alexandra Zhernakova et al.   SCIENCE

Population-level analysis of gut microbiome variation

(2016) Gwen Falony et al.   SCIENCE

Evolutionary architecture of the infant-adapted group of Bifidobacterium species associated with the probiotic function

(2016) Min-Jung Kwak et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont

(2016) Alexandra S. Tauzin et al.   mBio

Conjugated Linoleic Acid Production by Bifidobacteria: Screening, Kinetic, and Composition

(2016) Stefano Raimondi et al.   Biomed Research International

Transcriptional Regulation of Carbohydrate Utilization Pathways in the Bifidobacterium Genus

(2016) Matvei S. Khoroshkin et al.   Frontiers in Microbiology

Transcriptional interactions suggest niche segregation among microorganisms in the human gut

(2016) Damian Rafal Plichta et al.   Nature Microbiology

Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort

(2016) Antonio Gonzalez et al.   mSystems

Anxiety and Depression Increase in a Stepwise Manner in Parallel With Multiple FGIDs and Symptom Severity and Frequency

(2015) Maria Ines Pinto-Sanchez et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Effectiveness of Lactobacillus reuteri in infantile colic and colicky induced maternal depression: a prospective single blind randomized trial

(2015) Guo-Lin Mi et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Serotonin, tryptophan metabolism and the brain-gut-microbiome axis

(2015) S.M. O’Mahony et al.   BEHAVIOURAL BRAIN RESEARCH

Starch and starch hydrolysates are favorable carbon sources for Bifidobacteria in the human gut

(2015) Songling Liu et al.   BMC MICROBIOLOGY

Altered fecal microbiota composition in patients with major depressive disorder

(2015) Haiyin Jiang et al.   BRAIN BEHAVIOR AND IMMUNITY

Pathways of polyunsaturated fatty acid utilization: Implications for brain function in neuropsychiatric health and disease

(2015) Joanne J. Liu et al.   BRAIN RESEARCH

Enzymatic profiling of cellulosomal enzymes from the human gut bacterium, R uminococcus champanellensis , reveals a fine-tuned system for cohesin-dockerin recognition

(2015) Sarah Moraïs et al.   ENVIRONMENTAL MICROBIOLOGY

Insights from genomes of representatives of the human gut commensalBifidobacterium bifidum

(2015) Sabrina Duranti et al.   ENVIRONMENTAL MICROBIOLOGY

Dietary Fatty Acids Directly Impact Central Nervous System Autoimmunity via the Small Intestine

(2015) Aiden Haghikia et al.   IMMUNITY

Gut Microbiota Interacts With Brain Microstructure and Function

(2015) José-Manuel Fernandez-Real et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

Loss of δ-catenin function in severe autism

(2015) Tychele N. Turner et al.   NATURE

Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples

(2015) T. Korem et al.   SCIENCE

Symbiotic Human Gut Bacteria with Variable Metabolic Priorities for Host Mucosal Glycans

(2015) N. A. Pudlo et al.   mBio

In vitro fermentation of fructooligosaccharides with human gut bacteria

(2015) Bingyong Mao et al.   Food & Function

Risperidone-induced weight gain is mediated through shifts in the gut microbiome and suppression of energy expenditure

(2015) Sarah M. Bahr et al.   EBioMedicine

Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase

(2014) Anna Sheydina et al.   BMC BIOINFORMATICS

Intestinal permeability – a new target for disease prevention and therapy

(2014) Stephan C Bischoff et al.   BMC GASTROENTEROLOGY

Discovery and Characterization of Gut Microbiota Decarboxylases that Can Produce the Neurotransmitter Tryptamine

(2014) Brianna B. Williams et al.   Cell Host & Microbe

Diversity of the cultivable human gut microbiome involved in gluten metabolism: isolation of microorganisms with potential interest for coeliac disease

(2014) Alberto Caminero et al.   FEMS MICROBIOLOGY ECOLOGY

Activation of Gpr109a, Receptor for Niacin and the Commensal Metabolite Butyrate, Suppresses Colonic Inflammation and Carcinogenesis

(2014) Nagendra Singh et al.   IMMUNITY

A Gut Microbial Metabolite of Linoleic Acid, 10-Hydroxy-cis-12-octadecenoic Acid, Ameliorates Intestinal Epithelial Barrier Impairment Partially via GPR40-MEK-ERK Pathway

(2014) Junki Miyamoto et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Gut Microbial Metabolites of Polyunsaturated Fatty Acids Correlate with Specific Fecal Bacteria and Serum Markers of Metabolic Syndrome in Obese Women

(2014) Céline Druart et al.   LIPIDS

Constraint-based models predict metabolic and associated cellular functions

(2014) Aarash Bordbar et al.   NATURE REVIEWS GENETICS

Correlation between the human fecal microbiota and depression

(2014) A. Naseribafrouei et al.   NEUROGASTROENTEROLOGY AND MOTILITY

The Antipsychotic Olanzapine Interacts with the Gut Microbiome to Cause Weight Gain in Mouse

(2014) Andrew P. Morgan et al.   PLoS One

Xylan utilization in human gut commensal bacteria is orchestrated by unique modular organization of polysaccharide-degrading enzymes

(2014) M. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders

(2013) Elaine Y. Hsiao et al.   CELL

Consumption of Fermented Milk Product With Probiotic Modulates Brain Activity

(2013) Kirsten Tillisch et al.   GASTROENTEROLOGY

Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli

(2013) D. McCloskey et al.   Molecular Systems Biology

Control of pathogens and pathobionts by the gut microbiota

(2013) Nobuhiko Kamada et al.   NATURE IMMUNOLOGY

Update of the Healthy Eating Index: HEI-2010

(2013) Patricia M. Guenther et al.   Journal of the Academy of Nutrition and Dietetics

Microbial Endocrinology in the Microbiome-Gut-Brain Axis: How Bacterial Production and Utilization of Neurochemicals Influence Behavior

(2013) Mark Lyte   PLoS Pathogens

Antipsychotics and the gut microbiome: olanzapine-induced metabolic dysfunction is attenuated by antibiotic administration in the rat

(2013) K J Davey et al.   Translational Psychiatry

In depression, bacterial translocation may drive inflammatory responses, oxidative and nitrosative stress (O&NS), and autoimmune responses directed against O&NS-damaged neoepitopes

(2012) M. Maes et al.   ACTA PSYCHIATRICA SCANDINAVICA

Butyrate suppresses colonic inflammation through HDAC1-dependent Fas upregulation and Fas-mediated apoptosis of T cells

(2012) Mary A. Zimmerman et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Quinolinic acid, the inescapable neurotoxin

(2012) Gilles J. Guillemin   FEBS Journal

Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model

(2012) Pieter Van den Abbeele et al.   ISME Journal

Increased IgA and IgM responses against gut commensals in chronic depression: Further evidence for increased bacterial translocation or leaky gut

(2012) Michael Maes et al.   JOURNAL OF AFFECTIVE DISORDERS

γ-Aminobutyric acid production by culturable bacteria from the human intestine

(2012) E. Barrett et al.   JOURNAL OF APPLIED MICROBIOLOGY

Thiamine Nutritional Status and Depressive Symptoms Are Inversely Associated among Older Chinese Adults

(2012) Geng Zhang et al.   JOURNAL OF NUTRITION

The microbiome-gut-brain axis during early life regulates the hippocampal serotonergic system in a sex-dependent manner

(2012) G Clarke et al.   MOLECULAR PSYCHIATRY

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes

(2012) J.-H. Hehemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prevention of gut leakiness by a probiotic treatment leads to attenuated HPA response to an acute psychological stress in rats

(2012) Afifa Ait-Belgnaoui et al.   PSYCHONEUROENDOCRINOLOGY

Effects of probiotics on gut microbiota: mechanisms of intestinal immunomodulation and neuromodulation

(2012) Peera Hemarajata et al.   Therapeutic Advances in Gastroenterology

Combination of Allergic Factors Can Worsen Diarrheic Irritable Bowel Syndrome: Role of Barrier Defects and Mast Cells

(2011) M Vivinus-Nébot et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Intestinal absorption of water-soluble vitamins in health and disease

(2011) Hamid M. Said   BIOCHEMICAL JOURNAL

The Epithelial Barrier Is Maintained by In Vivo Tight Junction Expansion During Pathologic Intestinal Epithelial Shedding

(2011) Amanda M. Marchiando et al.   GASTROENTEROLOGY

The anxiolytic effect of Bifidobacterium longum NCC3001 involves vagal pathways for gut-brain communication

(2011) P. Bercik et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve

(2011) J. A. Bravo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

A Meta-Analytic Review of Polyunsaturated Fatty Acid Compositions in Patients with Depression

(2010) Pao-Yen Lin et al.   BIOLOGICAL PSYCHIATRY

Protection of dopaminergic cells from MPP+-mediated toxicity by histone deacetylase inhibition

(2010) Sarah K. Kidd et al.   BRAIN RESEARCH

Novel α-glucosidase from human gut microbiome: substrate specificities and their switch

(2010) Kemin Tan et al.   FASEB JOURNAL

Association Between Composition of the Human Gastrointestinal Microbiome and Development of Fatty Liver With Choline Deficiency

(2010) Melanie D. Spencer et al.   GASTROENTEROLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Dietary protein and protein-rich food in relation to severely depressed mood: A 10year follow-up of a national cohort

(2010) Allen R. Wolfe et al.   PROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY

Serum Folate, Vitamin B-12, and Homocysteine and Their Association With Depressive Symptoms Among U.S. Adults

(2010) May A. Beydoun et al.   PSYCHOSOMATIC MEDICINE

Histone deacetylase inhibitors up-regulate astrocyte GDNF and BDNF gene transcription and protect dopaminergic neurons

(2008) Xuefei Wu et al.   INTERNATIONAL JOURNAL OF NEUROPSYCHOPHARMACOLOGY

Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis

(2008) Djahida Bouskra et al.   NATURE

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

A link between stress and depression: Shifts in the balance between the kynurenine and serotonin pathways of tryptophan metabolism and the etiology and pathophysiology of depression

(2008) Hideki Miura et al.   STRESS-THE INTERNATIONAL JOURNAL ON THE BIOLOGY OF STRESS