In Silico Analysis of Putrefaction Pathways in Bacteria and Its Implication in Colorectal Cancer

Fusobacterium nucleatum Increases Proliferation of Colorectal Cancer Cells and Tumor Development in Mice by Activating Toll-Like Receptor 4 Signaling to Nuclear Factor−κB, and Up-regulating Expression of MicroRNA-21

(2017) Yongzhi Yang et al.   GASTROENTEROLOGY

Cadaverine Production by Using Cross-Linked Enzyme Aggregate of Escherichia coli Lysine Decarboxylase

(2017) Se Hyeon Park et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

IMG/M: integrated genome and metagenome comparative data analysis system

(2016) I-Min A. Chen et al.   NUCLEIC ACIDS RESEARCH

Association ofFusobacterium nucleatumwith immunity and molecular alterations in colorectal cancer

(2016) Katsuhiko Nosho   WORLD JOURNAL OF GASTROENTEROLOGY

Association ofFusobacterium nucleatuminfection with colorectal cancer in Chinese patients

(2016) Yu-Yuan Li et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Comparative In silico Analysis of Butyrate Production Pathways in Gut Commensals and Pathogens

(2016) Swadha Anand et al.   Frontiers in Microbiology

Bifidobacteria and Butyrate-Producing Colon Bacteria: Importance and Strategies for Their Stimulation in the Human Gut

(2016) Audrey Rivière et al.   Frontiers in Microbiology

Metabolic and Community Synergy of Oral Bacteria in Colorectal Cancer

(2016) Kaitlin J. Flynn et al.   mSphere

Review article: insights into colonic protein fermentation, its modulation and potential health implications

(2015) C. K. Yao et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Dietary polyamine intake and colorectal cancer risk in postmenopausal women

(2015) Ashley J Vargas et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Altered fecal microbiota composition in patients with major depressive disorder

(2015) Haiyin Jiang et al.   BRAIN BEHAVIOR AND IMMUNITY

Effects of Sevelamer Carbonate on Advanced Glycation End Products and Antioxidant/Pro-Oxidant Status in Patients with Diabetic Kidney Disease

(2015) E. M. Yubero-Serrano et al.   Clinical Journal of the American Society of Nephrology

Multifaceted control of DNA repair pathways by the hypoxic tumor microenvironment

(2015) Susan E. Scanlon et al.   DNA REPAIR

Alterations of mucosal microbiota in the colon of patients with inflammatory bowel disease revealed by real time polymerase chain reaction amplification of 16S ribosomal ribonucleic acid

(2015) BalakrishnanS Ramakrishna et al.   INDIAN JOURNAL OF MEDICAL RESEARCH

Hydrogen Sulfide Protects from Colitis and Restores Intestinal Microbiota Biofilm and Mucus Production

(2015) Jean-Paul Motta et al.   INFLAMMATORY BOWEL DISEASES

Impacts of Gut Bacteria on Human Health and Diseases

(2015) Yu-Jie Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Gut mucosal microbiome across stages of colorectal carcinogenesis

(2015) Geicho Nakatsu et al.   Nature Communications

The Role of Microbial Amino Acid Metabolism in Host Metabolism

(2015) Evelien Neis et al.   Nutrients

Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment

(2015) Michael B. Burns et al.   Genome Medicine

The Multifaceted Role of Commensal Microbiota in Homeostasis and Gastrointestinal Diseases

(2015) Marcelo José Barbosa Silva et al.   Journal of Immunology Research

The Human Gut Microbiome as a Screening Tool for Colorectal Cancer

(2014) J. P. Zackular et al.   Cancer Prevention Research

Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters

(2014) Peter Cimermancic et al.   CELL

Formation, Degradation, and Detoxification of Putrescine by Foodborne Bacteria: A Review

(2014) Leona Wunderlichová et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Fusobacterium and Enterobacteriaceae: Important players for CRC?

(2014) Emma Allen-Vercoe et al.   IMMUNOLOGY LETTERS

Putrescine production via the ornithine decarboxylation pathway improves the acid stress survival of Lactobacillus brevis and is part of a horizontally transferred acid resistance locus

(2014) Andrea Romano et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Community structure and elevational diversity patterns of soil Acidobacteria

(2014) Yuguang Zhang et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

The gut microbiota, bacterial metabolites and colorectal cancer

(2014) Petra Louis et al.   NATURE REVIEWS MICROBIOLOGY

Fecal Microbial Composition of Ulcerative Colitis and Crohn’s Disease Patients in Remission and Subsequent Exacerbation

(2014) Edgar S. Wills et al.   PLoS One

The Impact of Diet and Lifestyle on Gut Microbiota and Human Health

(2014) Michael Conlon et al.   Nutrients

Toxicity of Polyamines and Their Metabolic Products

(2013) Anthony E. Pegg   CHEMICAL RESEARCH IN TOXICOLOGY

Colorectal Carcinogenesis: A Cellular Response to Sustained Risk Environment

(2013) Kim Fung et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Dysbiosis Signature of Fecal Microbiota in Colorectal Cancer Patients

(2013) Na Wu et al.   MICROBIAL ECOLOGY

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Review of the association between meat consumption and risk of colorectal cancer

(2013) Eunjung Kim et al.   NUTRITION RESEARCH

Bacteria and tumours: causative agents or opportunistic inhabitants?

(2013) Joanne Cummins et al.   Infectious Agents and Cancer

Microbial pathways in colonic sulfur metabolism and links with health and disease

(2012) Franck Carbonero et al.   Frontiers in Physiology

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

The analysis of para-cresol production and tolerance in Clostridium difficile 027 and 012 strains

(2011) Lisa F Dawson et al.   BMC MICROBIOLOGY

Global cancer statistics

(2011) Ahmedin Jemal et al.   CA-A CANCER JOURNAL FOR CLINICIANS

Glutamate racemization and catabolism in Fusobacterium varium

(2011) Mohammad Ramezani et al.   FEBS Journal

Genomic analysis identifies association of Fusobacterium with colorectal carcinoma

(2011) A. D. Kostic et al.   GENOME RESEARCH

Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers

(2011) Tingting Wang et al.   ISME Journal

Relevance of protein fermentation to gut health

(2011) Karen Windey et al.   MOLECULAR NUTRITION & FOOD RESEARCH

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

H2S: A Universal Defense Against Antibiotics in Bacteria

(2011) K. Shatalin et al.   SCIENCE

Bacterial biogeography of the human digestive tract

(2011) Jennifer C. Stearns et al.   Scientific Reports

Detection of resistance genes and susceptibility patterns in Bacteroides and Parabacteroides strains

(2010) Renata F. Boente et al.   ANAEROBE

Origin of the Putrescine-Producing Ability of the Coagulase-Negative Bacterium Staphylococcus epidermidis 2015B

(2010) E. Coton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel Clostridium populations involved in the anaerobic degradation of Microcystis blooms

(2010) Peng Xing et al.   ISME Journal

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes

(2009) Gabi Kastenmüller et al.   GENOME BIOLOGY

A multifaceted role for polyamines in bacterial pathogens

(2008) Pratik Shah et al.   MOLECULAR MICROBIOLOGY