标题
American Gut: an Open Platform for Citizen Science Microbiome Research
作者
关键词
-
出版物
mSystems
Volume 3, Issue 3, Pages e00031-18
出版商
American Society for Microbiology
发表日期
2018-05-14
DOI
10.1128/msystems.00031-18
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra
- (2018) Alexey Gurevich et al. Nature Microbiology
- Oscillospira and related bacteria - From metagenomic species to metabolic features
- (2017) Uri Gophna et al. ENVIRONMENTAL MICROBIOLOGY
- metaSPAdes: a new versatile metagenomic assembler
- (2017) Sergey Nurk et al. GENOME RESEARCH
- Prevotella and Klebsiella proportions in fecal microbial communities are potential characteristic parameters for patients with major depressive disorder
- (2017) Ping Lin et al. JOURNAL OF AFFECTIVE DISORDERS
- Strains, functions and dynamics in the expanded Human Microbiome Project
- (2017) Jason Lloyd-Price et al. NATURE
- Commensal bacteria make GPCR ligands that mimic human signalling molecules
- (2017) Louis J. Cohen et al. NATURE
- A communal catalogue reveals Earth’s multiscale microbial diversity
- (2017) Luke R. Thompson et al. NATURE
- Trends in GPCR drug discovery: new agents, targets and indications
- (2017) Alexander S. Hauser et al. NATURE REVIEWS DRUG DISCOVERY
- Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania
- (2017) Samuel A. Smits et al. SCIENCE
- Core fecal microbiota of domesticated herbivorous ruminant, hindgut fermenters, and monogastric animals
- (2017) Michelle M. O’ Donnell et al. MicrobiologyOpen
- Atropos: specific, sensitive, and speedy trimming of sequencing reads
- (2017) John P. Didion et al. PeerJ
- Normalization and microbial differential abundance strategies depend upon data characteristics
- (2017) Sophie Weiss et al. Microbiome
- Dynamics of the human gut microbiome in inflammatory bowel disease
- (2017) Jonas Halfvarson et al. Nature Microbiology
- Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes
- (2017) Lingjing Jiang et al. mSystems
- Balance Trees Reveal Microbial Niche Differentiation
- (2017) James T. Morton et al. mSystems
- Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
- (2017) Amnon Amir et al. mSystems
- Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping
- (2017) Amnon Amir et al. mSystems
- Physiological and microbial adjustments to diet quality permit facultative herbivory in an omnivorous lizard
- (2016) Kevin D. Kohl et al. JOURNAL OF EXPERIMENTAL BIOLOGY
- Gut microbiome remodeling induces depressive-like behaviors through a pathway mediated by the host’s metabolism
- (2016) P Zheng et al. MOLECULAR PSYCHIATRY
- Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
- (2016) Mingxun Wang et al. NATURE BIOTECHNOLOGY
- OpenMS: a flexible open-source software platform for mass spectrometry data analysis
- (2016) Hannes L Röst et al. NATURE METHODS
- Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
- (2016) Alexandra Zhernakova et al. SCIENCE
- Population-level analysis of gut microbiome variation
- (2016) Gwen Falony et al. SCIENCE
- How gut microbes talk to organs: The role of endocrine and nervous routes
- (2016) Patrice D. Cani et al. Molecular Metabolism
- Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides
- (2016) Don D. Nguyen et al. Nature Microbiology
- Extreme Dysbiosis of the Microbiome in Critical Illness
- (2016) Daniel McDonald et al. mSphere
- Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies
- (2016) Se Jin Song et al. mSystems
- Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
- (2015) A Apprill et al. AQUATIC MICROBIAL ECOLOGY
- MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
- (2015) Yu-Wei Wu et al. BIOINFORMATICS
- Altered fecal microbiota composition in patients with major depressive disorder
- (2015) Haiyin Jiang et al. BRAIN BEHAVIOR AND IMMUNITY
- Marked seasonal variation in the wild mouse gut microbiota
- (2015) Corinne F Maurice et al. ISME Journal
- Fitting Linear Mixed-Effects Models Usinglme4
- (2015) Douglas Bates et al. Journal of Statistical Software
- Functional metagenomic discovery of bacterial effectors in the human microbiome and isolation of commendamide, a GPCR G2A/132 agonist
- (2015) Louis J. Cohen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Searching molecular structure databases with tandem mass spectra using CSI:FingerID
- (2015) Kai Dührkop et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Subsistence strategies in traditional societies distinguish gut microbiomes
- (2015) Alexandra J. Obregon-Tito et al. Nature Communications
- Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
- (2015) Gemma Henderson et al. Scientific Reports
- Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection
- (2015) Alexa Weingarden et al. Microbiome
- The microbiome of uncontacted Amerindians
- (2015) J. C. Clemente et al. Science Advances
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
- (2014) Molly K Gibson et al. ISME Journal
- Minireview: Gut Microbiota: The Neglected Endocrine Organ
- (2014) Gerard Clarke et al. MOLECULAR ENDOCRINOLOGY
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Global marine bacterial diversity peaks at high latitudes in winter
- (2013) Joshua Ladau et al. ISME Journal
- Molecular Networking as a Dereplication Strategy
- (2013) Jane Y. Yang et al. JOURNAL OF NATURAL PRODUCTS
- Diet rapidly and reproducibly alters the human gut microbiome
- (2013) Lawrence A. David et al. NATURE
- The abundance and variety of carbohydrate-active enzymes in the human gut microbiota
- (2013) Abdessamad El Kaoutari et al. NATURE REVIEWS MICROBIOLOGY
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- Evaluation of Normalization Methods to Pave the Way Towards Large-Scale LC-MS-Based Metabolomics Profiling Experiments
- (2013) Bedilu Alamirie Ejigu et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
- Escherichia coli Producing Colibactin Triggers Premature and Transmissible Senescence in Mammalian Cells
- (2013) Thomas Secher et al. PLoS One
- Polyunsaturated fatty acid saturation by gut lactic acid bacteria affecting host lipid composition
- (2013) S. Kishino et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cohabiting family members share microbiota with one another and with their dogs
- (2013) Se Jin Song et al. eLife
- EMPeror: a tool for visualizing high-throughput microbial community data
- (2013) Yoshiki Vázquez-Baeza et al. GigaScience
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Human gut microbiome viewed across age and geography
- (2012) Tanya Yatsunenko et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Mass spectral molecular networking of living microbial colonies
- (2012) J. Watrous et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
- (2011) Daniel McDonald et al. ISME Journal
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
- (2010) Tomáš Pluskal et al. BMC BIOINFORMATICS
- UniFrac: an effective distance metric for microbial community comparison
- (2010) Catherine Lozupone et al. ISME Journal
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- FragGeneScan: predicting genes in short and error-prone reads
- (2010) Mina Rho et al. NUCLEIC ACIDS RESEARCH
- Succession of microbial consortia in the developing infant gut microbiome
- (2010) J. E. Koenig et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Controlling False Discoveries in Multidimensional Directional Decisions, with Applications to Gene Expression Data on Ordered Categories
- (2009) Wenge Guo et al. BIOMETRICS
- Filtering for increased power for microarray data analysis
- (2009) Amber J Hackstadt et al. BMC BIOINFORMATICS
- Challenges of self-reported medical conditions and electronic medical records among members of a large military cohort
- (2009) Besa Smith et al. BMC Medical Research Methodology
- Genetic Structure and Distribution of the Colibactin Genomic Island among Members of the Family Enterobacteriaceae
- (2009) J. Putze et al. INFECTION AND IMMUNITY
- Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees
- (2009) K. Liu et al. SCIENCE
- Worlds within worlds: evolution of the vertebrate gut microbiota
- (2008) Ruth E. Ley et al. NATURE REVIEWS MICROBIOLOGY
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