Integrating genomic-enabled prediction and high-throughput phenotyping in breeding for climate-resilient bread wheat

Sensitivity of European wheat to extreme weather

(2018) H. Mäkinen et al.   FIELD CROPS RESEARCH

Shifting the limits in wheat research and breeding using a fully annotated reference genome

(2018) et al.   SCIENCE

Wheat yield loss attributable to heat waves, drought and water excess at the global, national and subnational scales

(2017) M Zampieri et al.   Environmental Research Letters

How do inputs and weather drive wheat yield volatility? The example of Germany

(2017) Hakon Albers et al.   FOOD POLICY

Genomic prediction ability for yield-related traits in German winter barley elite material

(2017) Patrick Thorwarth et al.   THEORETICAL AND APPLIED GENETICS

Optimization of multi-environment trials for genomic selection based on crop models

(2017) R. Rincent et al.   THEORETICAL AND APPLIED GENETICS

Accelerating wheat breeding for end-use quality with multi-trait genomic predictions incorporating near infrared and nuclear magnetic resonance-derived phenotypes

(2017) B. J. Hayes et al.   THEORETICAL AND APPLIED GENETICS

Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum

(2017) Samuel B. Fernandes et al.   THEORETICAL AND APPLIED GENETICS

Genomic and pedigree-based prediction for leaf, stem, and stripe rust resistance in wheat

(2017) Philomin Juliana et al.   THEORETICAL AND APPLIED GENETICS

Prediction of Multiple-Trait and Multiple-Environment Genomic Data Using Recommender Systems

(2017) Osval A. Montesinos-López et al.   G3-Genes Genomes Genetics

Single-Step Genomic and Pedigree Genotype × Environment Interaction Models for Predicting Wheat Lines in International Environments

(2017) Paulino Pérez-Rodríguez et al.   Plant Genome

Comparison of Models and Whole-Genome Profiling Approaches for Genomic-Enabled Prediction of Septoria Tritici Blotch, Stagonospora Nodorum Blotch, and Tan Spot Resistance in Wheat

(2017) Philomin Juliana et al.   Plant Genome

Multitrait, Random Regression, or Simple Repeatability Model in High-Throughput Phenotyping Data Improve Genomic Prediction for Wheat Grain Yield

(2017) Jin Sun et al.   Plant Genome

Performance of genomic prediction within and across generations in maritime pine

(2016) Jérôme Bartholomé et al.   BMC GENOMICS

Grain yield, adaptation and progress in breeding for early-maturing and heat-tolerant wheat lines in South Asia

(2016) S. Mondal et al.   FIELD CROPS RESEARCH

Application of unmanned aerial systems for high throughput phenotyping of large wheat breeding nurseries

(2016) Atena Haghighattalab et al.   Plant Methods

Similar estimates of temperature impacts on global wheat yield by three independent methods

(2016) Bing Liu et al.   Nature Climate Change

A Genomic Bayesian Multi-trait and Multi-environment Model

(2016) Osval A. Montesinos-López et al.   G3-Genes Genomes Genetics

Canopy Temperature and Vegetation Indices from High-Throughput Phenotyping Improve Accuracy of Pedigree and Genomic Selection for Grain Yield in Wheat

(2016) Jessica Rutkoski et al.   G3-Genes Genomes Genetics

Genomic Selection for Processing and End-Use Quality Traits in the CIMMYT Spring Bread Wheat Breeding Program

(2016) Sarah D. Battenfield et al.   Plant Genome

An integrated approach to maintaining cereal productivity under climate change

(2016) Matthew P. Reynolds et al.   Global Food Security-Agriculture Policy Economics and Environment

Adding Genetically Distant Individuals to Training Populations Reduces Genomic Prediction Accuracy in Barley

(2015) Aaron J. Lorenz et al.   CROP SCIENCE

Effect of warming temperatures on US wheat yields

(2015) Jesse Tack et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climate variation explains a third of global crop yield variability

(2015) Deepak K. Ray et al.   Nature Communications

LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms

(2015) Daniel Money et al.   G3-Genes Genomes Genetics

Food security: the challenge of increasing wheat yield and the importance of not compromising food safety

(2014) T. Curtis et al.   ANNALS OF APPLIED BIOLOGY

Genomic regions associated with grain yield under drought stress in wheat (Triticum aestivum L.)

(2014) Sanyukta Shukla et al.   EUPHYTICA

Effect of short-term heat stress prior to flowering and early grain set on the grain yield of wheat

(2014) A.S.M.H.M. Talukder et al.   FIELD CROPS RESEARCH

Marker-Based Estimation of Heritability in Immortal Populations

(2014) Willem Kruijer et al.   GENETICS

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Adapting wheat in Europe for climate change

(2014) M.A. Semenov et al.   JOURNAL OF CEREAL SCIENCE

Integration of phenotyping and genetic platforms for a better understanding of wheat performance under drought

(2014) M. S. Lopes et al.   JOURNAL OF EXPERIMENTAL BOTANY

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Genetic characterization of the wheat association mapping initiative (WAMI) panel for dissection of complex traits in spring wheat

(2014) M. S. Lopes et al.   THEORETICAL AND APPLIED GENETICS

Adverse weather conditions for European wheat production will become more frequent with climate change

(2014) Miroslav Trnka et al.   Nature Climate Change

Considerations When Deploying Canopy Temperature to Select High Yielding Wheat Breeding Lines under Drought and Heat Stress

(2014) R. Mason et al.   Agronomy-Basel

The use of unbalanced historical data for genomic selection in an international wheat breeding program

(2013) Julie C. Dawson et al.   FIELD CROPS RESEARCH

Development and evaluation of a field-based high-throughput phenotyping platform

(2013) Pedro Andrade-Sanchez et al.   FUNCTIONAL PLANT BIOLOGY

Genomic prediction in CIMMYT maize and wheat breeding programs

(2013) J Crossa et al.   HEREDITY

Spatial Resolution Effects on Chlorophyll Fluorescence Retrieval in a Heterogeneous Canopy Using Hyperspectral Imagery and Radiative Transfer Simulation

(2013) P. J. Zarco-Tejada et al.   IEEE Geoscience and Remote Sensing Letters

Ppd-B1 and Ppd-D1 and their effects in southern Australian wheat

(2013) Karen Cane et al.   Crop & Pasture Science

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

Multiple-Trait Genomic Selection Methods Increase Genetic Value Prediction Accuracy

(2012) Yi Jia et al.   GENETICS

Stay-green in spring wheat can be determined by spectral reflectance measurements (normalized difference vegetation index) independently from phenology

(2012) Marta S. Lopes et al.   JOURNAL OF EXPERIMENTAL BOTANY

High-throughput Phenotyping and Genomic Selection: The Frontiers of Crop Breeding ConvergeF

(2012) Llorenç Cabrera-Bosquet et al.   Journal of Integrative Plant Biology

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Physiological Traits for Improving Heat Tolerance in Wheat

(2012) C. M. Cossani et al.   PLANT PHYSIOLOGY

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Detection of two major grain yield QTL in bread wheat (Triticum aestivum L.) under heat, drought and high yield potential environments

(2012) Dion Bennett et al.   THEORETICAL AND APPLIED GENETICS

The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation

(2012) Ben J. Hayes et al.   TRENDS IN GENETICS

Evaluation of Genomic Prediction Methods for Fusarium Head Blight Resistance in Wheat

(2012) Jessica Rutkoski et al.   Plant Genome

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Heat Stress in Wheat during Reproductive and Grain-Filling Phases

(2011) Muhammad Farooq et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Reliability of direct genomic values for animals with different relationships within and to the reference population

(2011) M. Pszczola et al.   JOURNAL OF DAIRY SCIENCE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

FARRER REVIEW. Wheat physiology: a review of recent developments

(2011) R. A. Fischer   Crop & Pasture Science

Partitioning of assimilates to deeper roots is associated with cooler canopies and increased yield under drought in wheat

(2010) Marta S. Lopes et al.   FUNCTIONAL PLANT BIOLOGY

Genetic and genomic tools to improve drought tolerance in wheat

(2010) D. Fleury et al.   JOURNAL OF EXPERIMENTAL BOTANY

Heat and drought adaptive QTL in a wheat population designed to minimize confounding agronomic effects

(2010) R. Suzuky Pinto et al.   THEORETICAL AND APPLIED GENETICS

Genomic-Enabled Prediction Based on Molecular Markers and Pedigree Using the Bayesian Linear Regression Package in R

(2010) Paulino Pérez et al.   Plant Genome

Phenotyping approaches for physiological breeding and gene discovery in wheat

(2009) M. Reynolds et al.   ANNALS OF APPLIED BIOLOGY

Predicting Quantitative Traits With Regression Models for Dense Molecular Markers and Pedigree

(2009) G. de los Campos et al.   GENETICS

Climate change: Can wheat beat the heat?

(2008) Rodomiro Ortiz et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Translational research impacting on crop productivity in drought-prone environments

(2008) Matthew Reynolds et al.   CURRENT OPINION IN PLANT BIOLOGY

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE