De novo sequencing and analysis of the lily pollen transcriptome: an open access data source for an orphan plant species
出版年份 2014 全文链接
标题
De novo sequencing and analysis of the lily pollen transcriptome: an open access data source for an orphan plant species
作者
关键词
<em class=EmphasisTypeItalic >Lilium longiflorum</em>, Next generation sequencing, Pollen, RNA-Seq, Tip growth
出版物
PLANT MOLECULAR BIOLOGY
Volume 87, Issue 1-2, Pages 69-80
出版商
Springer Nature
发表日期
2014-10-23
DOI
10.1007/s11103-014-0261-2
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature
- (2014) Jörg D Becker et al. BMC PLANT BIOLOGY
- Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data
- (2013) MARC LOHSE et al. PLANT CELL AND ENVIRONMENT
- RNA-Seq of Arabidopsis Pollen Uncovers Novel Transcription and Alternative Splicing
- (2013) A. E. Loraine et al. PLANT PHYSIOLOGY
- Dynamic Adaption of Metabolic Pathways during Germination and Growth of Lily Pollen Tubes after Inhibition of the Electron Transport Chain
- (2013) G. Obermeyer et al. PLANT PHYSIOLOGY
- Pump up the volume - a central role for the plasma membrane H+ pump in pollen germination and tube growth
- (2013) Veronika Lang et al. PROTOPLASMA
- The Amborella Genome and the Evolution of Flowering Plants
- (2013) et al. SCIENCE
- Designing a transcriptome next-generation sequencing project for a nonmodel plant species1
- (2012) Susan R. Strickler et al. AMERICAN JOURNAL OF BOTANY
- Strategies for transcriptome analysis in nonmodel plants
- (2012) Judson A. Ward et al. AMERICAN JOURNAL OF BOTANY
- Calcium - a central regulator of pollen germination and tube growth
- (2012) Leonie Steinhorst et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa
- (2012) Arwa Shahin et al. BMC GENOMICS
- Comprehensive analysis of tobacco pollen transcriptome unveils common pathways in polar cell expansion and underlying heterochronic shift during spermatogenesis
- (2012) Said Hafidh et al. BMC PLANT BIOLOGY
- A novel method for efficientin vitrogermination and tube growth ofArabidopsis thalianapollen
- (2012) M. J. Rodriguez-Enriquez et al. NEW PHYTOLOGIST
- RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
- (2012) M. Lohse et al. NUCLEIC ACIDS RESEARCH
- Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen
- (2011) Weina Ge et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Identification of lily pollen 14-3-3 isoforms and their subcellular and time-dependent expression profile
- (2011) Heidi Pertl et al. BIOLOGICAL CHEMISTRY
- Calcium regulation of tip growth: new genes for old mechanisms
- (2011) Kai R Konrad et al. CURRENT OPINION IN PLANT BIOLOGY
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Transient expression and analysis of fluorescent reporter proteins in plant pollen tubes
- (2011) Hao Wang et al. Nature Protocols
- The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
- (2011) Philippe Lamesch et al. NUCLEIC ACIDS RESEARCH
- Identification and Exploration of Pollen Tube Small Proteins Encoded by Pollination-Induced Transcripts
- (2011) Jong-Chin Huang et al. PLANT AND CELL PHYSIOLOGY
- Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa
- (2010) Li Q Wei et al. BMC GENOMICS
- Isobaric Tags for Relative and Absolute Quantification- based Comparative Proteomics Reveals the Features of Plasma Membrane-Associated Proteomes of Pollen Grains and Pollen Tubes from Lilium davidii
- (2010) Bing Han et al. Journal of Integrative Plant Biology
- Self-Incompatibility in Papaver rhoeas Activates Nonspecific Cation Conductance Permeable to Ca2+ and K+
- (2010) J. Wu et al. PLANT PHYSIOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Genomic expression profiling of mature soybean (Glycine max) pollen
- (2009) Farzad Haerizadeh et al. BMC PLANT BIOLOGY
- Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function
- (2009) M. A. Grobei et al. GENOME RESEARCH
- The role of ion fluxes in polarized cell growth and morphogenesis: the pollen tube as an experimental paradigm
- (2009) Erwan Michard et al. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY
- Flower numbers, pod production, pollen viability, and pistil function are reduced and flower and pod abortion increased in chickpea (Cicer arietinum L.) under terminal drought
- (2009) X. Fang et al. JOURNAL OF EXPERIMENTAL BOTANY
- Comparative Proteomic Analysis ofArabidopsisMature Pollen and Germinated Pollen
- (2009) Junjie Zou et al. Journal of Integrative Plant Biology
- The Pollen Organelle Membrane Proteome Reveals Highly Spatial−Temporal Dynamics during Germination and Tube Growth of Lily Pollen
- (2009) Heidi Pertl et al. JOURNAL OF PROTEOME RESEARCH
- Defensin-like polypeptide LUREs are pollen tube attractants secreted from synergid cells
- (2009) Satohiro Okuda et al. NATURE
- A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize
- (2009) BJÖRN USADEL et al. PLANT CELL AND ENVIRONMENT
- Penetration of the Stigma and Style Elicits a Novel Transcriptome in Pollen Tubes, Pointing to Genes Critical for Growth in a Pistil
- (2009) Yuan Qin et al. PLoS Genetics
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Structural and Signaling Networks for the Polar Cell Growth Machinery in Pollen Tubes
- (2008) Alice Y. Cheung et al. Annual Review of Plant Biology
- Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
- (2008) Stefanie Hartmann et al. BMC EVOLUTIONARY BIOLOGY
- AtTIP1;3andAtTIP5;1, the only highly expressed Arabidopsis pollen-specific aquaporins, transport water and urea
- (2008) Gabriela Soto et al. FEBS LETTERS
- Transcriptome Analyses Show Changes in Gene Expression to Accompany Pollen Germination and Tube Growth in Arabidopsis
- (2008) Y. Wang et al. PLANT PHYSIOLOGY
- Tobacco pollen tubes as cellular models for ion dynamics: improved spatial and temporal resolution of extracellular flux and free cytosolic concentration of calcium and protons using pHluorin and YC3.1 CaMeleon
- (2008) Erwan Michard et al. SEXUAL PLANT REPRODUCTION
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started