Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

(2011) Satya S Narina et al.   BMC GENOMICS

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

(2011) José Blanca et al.   BMC GENOMICS

Exploiting EST databases for the development and characterization of EST-SSR markers in castor bean (Ricinus communis L.)

(2011) Lijun Qiu et al.   BMC PLANT BIOLOGY

High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species

(2011) Dario Grattapaglia et al.   BMC PLANT BIOLOGY

Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]

(2011) Sutapa Dutta et al.   BMC PLANT BIOLOGY

Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication

(2011) Angel Amores et al.   GENETICS

Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C3 and C4 species

(2011) Andrea Bräutigam et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping

(2010) Hong Huang et al.   MOLECULAR BREEDING

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Gene Expression Profiles Deciphering Rice Phenotypic Variation between Nipponbare (Japonica) and 93-11 (Indica) during Oxidative Stress

(2010) Fengxia Liu et al.   PLoS One

Construction of chromosomal recombination maps of three genomes of lilies (Lilium) based on GISH analysis

(2009) Nadeem Khan et al.   GENOME

Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling

(2009) Nicola Palmieri et al.   PLoS One

Characterizing natural variation using next-generation sequencing technologies

(2009) Yoav Gilad et al.   TRENDS IN GENETICS

Insights into the Musa genome: syntenic relationships to rice and between Musa species

(2008) Magali Lescot et al.   BMC GENOMICS

Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing

(2008) Christopher W. Wheat   GENETICA