The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

Arabidopsis thaliana- The Model Plant to Study Host-Pathogen Interactions

(2011) Nikolaus L. Schlaich   CURRENT DRUG TARGETS

Can plant biotechnology help in solving our food and energy shortage in the future?

(2011) Adi Avni et al.   CURRENT OPINION IN BIOTECHNOLOGY

pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana

(2011) Katja Baerenfaller et al.   Integrative Biology

Supersplat--spliced RNA-seq alignment

(2010) D. W. Bryant et al.   BIOINFORMATICS

The value of Arabidopsis research in understanding human disease states

(2010) Xiang Ming Xu et al.   CURRENT OPINION IN BIOTECHNOLOGY

A stress-free walk from Arabidopsis to crops

(2010) Yin Hoon Chew et al.   CURRENT OPINION IN BIOTECHNOLOGY

Arabidopsis as a model for wood formation

(2010) Jing Zhang et al.   CURRENT OPINION IN BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

The development of Arabidopsis as a model plant

(2010) Maarten Koornneef et al.   PLANT JOURNAL

Twenty-First Century Plant Biology: Impacts of the Arabidopsis Genome on Plant Biology and Agriculture

(2010) C. R. Buell et al.   PLANT PHYSIOLOGY

Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways for Plants

(2010) P. Zhang et al.   PLANT PHYSIOLOGY

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) cellular component curation

(2009) Kimberly Van Auken et al.   BMC BIOINFORMATICS

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

The Gene Ontology in 2010: extensions and refinements

(2009)   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2010

(2009) B. Aranda et al.   NUCLEIC ACIDS RESEARCH

The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species

(2009)   PLoS Computational Biology

The Impact of Arabidopsis on Human Health: Diversifying Our Portfolio

(2008) Alan M. Jones et al.   CELL

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

Sequencing of natural strains of Arabidopsis thaliana with short reads

(2008) S. Ossowski et al.   GENOME RESEARCH

Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets

(2008) Nicolas Buisine et al.   GENOMICS

Discovery and revision of Arabidopsis genes by proteogenomics

(2008) N. E. Castellana et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics

(2008) K. Baerenfaller et al.   SCIENCE