DNA metabarcoding of unfractionated water samples relates phyto-, zoo- and bacterioplankton dynamics and reveals a single-taxon bacterial bloom

High-resolution phylogenetic microbial community profiling

(2016) Esther Singer et al.   ISME Journal

Shifts in diversity and function of lake bacterial communities upon glacier retreat

(2016) Hannes Peter et al.   ISME Journal

Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom

(2016) David M. Needham et al.   Nature Microbiology

Bacterial diversity along a 2600 km river continuum

(2015) Domenico Savio et al.   ENVIRONMENTAL MICROBIOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Large biomass of small feeders: ciliates may dominate herbivory in eutrophic lakes

(2015) Betty Lischke et al.   JOURNAL OF PLANKTON RESEARCH

Marine microbial community dynamics and their ecological interpretation

(2015) Jed A. Fuhrman et al.   NATURE REVIEWS MICROBIOLOGY

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Microbial diversity and community respiration in freshwater sediments influenced by artificial light at night

(2015) F. Holker et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Illuminating Microbial Dark Matter in Meromictic Sakinaw Lake

(2014) Esther A. Gies et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Contrasting response of two shallow eutrophic cold temperate lakes to a partial winterkill of fish

(2014) Sabine Hilt et al.   HYDROBIOLOGIA

Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

(2014) A Murat Eren et al.   ISME Journal

Massive Regime Shifts and High Activity of Heterotrophic Bacteria in an Ice-Covered Lake

(2014) Mina Bižić-Ionescu et al.   PLoS One

Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

(2014) A. Shade et al.   mBio

The microbial contribution to macroecology

(2014) Albert Barberán   Frontiers in Microbiology

A regime shift from macrophyte to phytoplankton dominance enhances carbon burial in a shallow, eutrophic lake

(2013) Soren M. Brothers et al.   Ecosphere

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna

(2012) C. Q. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Experimental factors affecting PCR-based estimates of microbial species richness and evenness

(2010) Anna Engelbrektson et al.   ISME Journal

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Circumpolar synchrony in big river bacterioplankton

(2009) Byron C. Crump et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA