Freshwater biomonitoring in the Information Age

Phylogenetic signal in diatom ecology: perspectives for aquatic ecosystems biomonitoring

(2016) François Keck et al.   ECOLOGICAL APPLICATIONS

Protist metabarcoding and environmental biomonitoring: Time for change

(2016) J. Pawlowski et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Big data opportunities and challenges for assessing multiple stressors across scales in aquatic ecosystems

(2016) K. A. Dafforn et al.   MARINE AND FRESHWATER RESEARCH

Metabarcoding of benthic eukaryote communities predicts the ecological condition of estuaries

(2015) Anthony A. Chariton et al.   ENVIRONMENTAL POLLUTION

Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data

(2015) Joana Amorim Visco et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing

(2015) Joel F. Gibson et al.   PLoS One

It's Good to Share: Why Environmental Scientists’ Ethics Are Out of Date

(2014) Patricia A. Soranno et al.   BIOSCIENCE

Is DNA Barcoding Actually Cheaper and Faster than Traditional Morphological Methods: Results from a Survey of Freshwater Bioassessment Efforts in the United States?

(2014) Eric D. Stein et al.   PLoS One

Ten years of next-generation sequencing technology

(2014) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Does DNA barcoding improve performance of traditional stream bioassessment metrics?

(2014) Eric D. Stein et al.   Freshwater Science

Utility of environmental DNA for monitoring rare and indicator macroinvertebrate species

(2014) Elvira Mächler et al.   Freshwater Science

A next-generation sequencing approach to river biomonitoring using benthic diatoms

(2014) Lenaïg Kermarrec et al.   Freshwater Science

Big data and the future of ecology

(2013) Stephanie E Hampton et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

The big challenges of big data

(2013) Vivien Marx   NATURE

Phylogenetic eigenvector maps: a framework to model and predict species traits

(2013) Guillaume Guénard et al.   Methods in Ecology and Evolution

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

(2012) DONALD J. BAIRD et al.   MOLECULAR ECOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Bioinformatic challenges for DNA metabarcoding of plants and animals

(2012) ERIC COISSAC et al.   MOLECULAR ECOLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Using phylogenetic information to predict species tolerances to toxic chemicals

(2011) Guillaume Guénard et al.   ECOLOGICAL APPLICATIONS

Three hundred ways to assess Europe's surface waters: An almost complete overview of biological methods to implement the Water Framework Directive

(2011) Sebastian Birk et al.   ECOLOGICAL INDICATORS

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos

(2011) Mehrdad Hajibabaei et al.   PLoS One

Challenges and Opportunities of Open Data in Ecology

(2011) O. J. Reichman et al.   SCIENCE

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description

(2010) Paul Z. Goldstein et al.   BIOESSAYS

The science and application of ecological monitoring

(2010) David B. Lindenmayer et al.   BIOLOGICAL CONSERVATION

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

The integrative future of taxonomy

(2010) Jose M. Padial et al.   Frontiers in Zoology

Cost-efficiency of biodiversity indicators for Mediterranean ecosystems and the effects of socio-economic factors

(2010) Yael Mandelik et al.   JOURNAL OF APPLIED ECOLOGY

Global threats to human water security and river biodiversity

(2010) C. J. Vörösmarty et al.   NATURE

Defining DNA-Based Operational Taxonomic Units for Microbial-Eukaryote Ecology

(2009) D. A. Caron et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Species detection using environmental DNA from water samples

(2008) G. F. Ficetola et al.   Biology Letters