Mycobacterial Phylogenomics: An Enhanced Method for Gene Turnover Analysis Reveals Uneven Levels of Gene Gain and Loss among Species and Gene Families

New Approaches to Target the Mycolic Acid Biosynthesis Pathway for the Development of Tuberculosis Therapeutics

(2014) E. North et al.   CURRENT PHARMACEUTICAL DESIGN

Disruption of Mycobactin Biosynthesis Leads to Attenuation of Mycobacterium tuberculosis for Growth and Virulence

(2013) P. Vineel Reddy et al.   JOURNAL OF INFECTIOUS DISEASES

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

(2013) Mira V. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring ancient divergences requires genes with strong phylogenetic signals

(2013) Leonidas Salichos et al.   NATURE

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

Comparative Phylogenomics of Pathogenic and Non-Pathogenic Mycobacterium

(2013) Arun N. Prasanna et al.   PLoS One

Identification of New Drug Targets and Resistance Mechanisms in Mycobacterium tuberculosis

(2013) Thomas R. Ioerger et al.   PLoS One

Identification of a small molecule with activity against drug-resistant and persistent tuberculosis

(2013) F. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Virulence factors of theMycobacterium tuberculosiscomplex

(2013) Marina A. Forrellad et al.   Virulence

Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis

(2012) Abigail McGuire et al.   BMC GENOMICS

Role of glycans and glycoproteins in disease development byMycobacterium tuberculosis

(2012) Avinash Sonawane et al.   CRITICAL REVIEWS IN MICROBIOLOGY

T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks

(2012) A. Boc et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomic and Phylogenetic Approaches to Characterize the Role of Genetic Recombination in Mycobacterial Evolution

(2012) Silvia E. Smith et al.   PLoS One

BadiRate: estimating family turnover rates by likelihood-based methods

(2011) P. Librado et al.   BIOINFORMATICS

Development of new antituberculous drugs based on bacterial virulence factors interfering with host cytokine networks

(2011) Haruaki Tomioka et al.   JOURNAL OF INFECTION AND CHEMOTHERAPY

The PE and PPE proteins of Mycobacterium tuberculosis

(2011) Sangita Mukhopadhyay et al.   TUBERCULOSIS

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved

(2010) Iñaki Comas et al.   NATURE GENETICS

Anchor-Based Whole Genome Phylogeny (ABWGP): A Tool for Inferring Evolutionary Relationship among Closely Related Microorganims

(2010) Anchal Vishnoi et al.   PLoS One

Mycobacterium africanum—Review of an Important Cause of Human Tuberculosis in West Africa

(2010) Bouke C. de Jong et al.   PLoS Neglected Tropical Diseases

Identification of virulence determinants of Mycobacterium avium that impact on the ability to resist host killing mechanisms

(2009) Y.-j. Li et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration

(2008) S. Bauer et al.   BIOINFORMATICS

Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis

(2008) T. P. Stinear et al.   GENOME RESEARCH

Nutrient acquisition by mycobacteria

(2008) M. Niederweis   MICROBIOLOGY-SGM

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures

(2008) A. Stamatakis et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES