Large Deletions in the pAtC58 Megaplasmid of Agrobacterium tumefaciens Can Confer Reduced Carriage Cost and Increased Expression of Virulence Genes

Reconciliation of Sequence Data and Updated Annotation of the Genome of Agrobacterium tumefaciens C58, and Distribution of a Linear Chromosome in the Genus Agrobacterium

(2012) Steven Slater et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The repAC replication system of the Rhizobium leguminosarum pRL7 plasmid is functional: Implications regarding the origin and evolution of repABC plasmids

(2012) Gabriela Pérez-Segura et al.   PLASMID

The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain

(2011) Laura Cervantes et al.   BMC MICROBIOLOGY

Antiparallel and Interlinked Control of Cellular Iron Levels by the Irr and RirA Regulators of Agrobacterium tumefaciens

(2011) M. E. Hibbing et al.   JOURNAL OF BACTERIOLOGY

Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid

(2011) Daniel Wibberg et al.   JOURNAL OF BIOTECHNOLOGY

Analysis of core genes supports the reclassification of strains Agrobacterium radiobacter K84 and Agrobacterium tumefaciens AKE10 into the species Rhizobium rhizogenes

(2010) Encarna Velázquez et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

(2009) K. Ye et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Horizontal gene transfer and diverse functional constrains within a common replication-partitioning system in Alphaproteobacteria: the repABC operon

(2009) Santiago Castillo-Ramírez et al.   BMC GENOMICS

Plasmid transfer systems in the rhizobia

(2009) Hao Ding et al.   CANADIAN JOURNAL OF MICROBIOLOGY

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

(2009) Ken Chen et al.   NATURE METHODS

Replication and conjugative mobilization of broad host-range IncQ plasmids

(2009) Richard Meyer   PLASMID

Homologous recombination and dynamics of rhizobial genomes

(2009) Ma del Carmen Orozco-Mosqueda et al.   RESEARCH IN MICROBIOLOGY

The repABC plasmid family

(2008) Miguel A. Cevallos et al.   PLASMID

A Common Genomic Framework for a Diverse Assembly of Plasmids in the Symbiotic Nitrogen Fixing Bacteria

(2008) Lisa C. Crossman et al.   PLoS One