Strong Mutational Bias Toward Deletions in the Drosophila melanogaster Genome Is Compensated by Selection

Unconstrained evolution in short introns? - An analysis of genome-wide polymorphism and divergence data from Drosophila

(2012) F. Clemente et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Estimating the Rate of Adaptive Molecular Evolution When the Evolutionary Divergence Between Species is Small

(2012) Peter D. Keightley et al.   JOURNAL OF MOLECULAR EVOLUTION

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

(2011) André Gilles et al.   BMC GENOMICS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Both Size and GC-Content of Minimal Introns Are Selected in Human Populations

(2011) Dapeng Wang et al.   PLoS One

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

On the Utility of Short Intron Sequences as a Reference for the Detection of Positive and Negative Selection in Drosophila

(2010) J. Parsch et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Estimating Selection Intensity on Synonymous Codon Usage in a Nonequilibrium Population

(2009) K. Zeng et al.   GENETICS

Measuring the Rates of Spontaneous Mutation From Deep and Large-Scale Polymorphism Data

(2009) Philipp W. Messer   GENETICS

Scanning for the Signatures of Positive Selection for Human-Specific Insertions and Deletions

(2009) Chun-Hsi Chen et al.   Genome Biology and Evolution

Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change

(2009) A. Eyre-Walker et al.   MOLECULAR BIOLOGY AND EVOLUTION

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics

The McDonald-Kreitman Test and Slightly Deleterious Mutations

(2008) J. Charlesworth et al.   MOLECULAR BIOLOGY AND EVOLUTION