The Fate of Arabidopsis thaliana Homeologous CNSs and Their Motifs in the Paleohexaploid Brassica rapa

A Transcription Factor Collective Defines Cardiac Cell Fate and Reflects Lineage History

(2012) Guillaume Junion et al.   CELL

Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants

(2012) Michael Freeling et al.   CURRENT OPINION IN PLANT BIOLOGY

Altered Patterns of Fractionation and Exon Deletions in Brassica rapa Support a Two-Step Model of Paleohexaploidy

(2012) H. Tang et al.   GENETICS

Conserved Noncoding Sequences Highlight Shared Components of Regulatory Networks in Dicotyledonous Plants

(2012) Laura Baxter et al.   PLANT CELL

Screening synteny blocks in pairwise genome comparisons through integer programming

(2011) Haibao Tang et al.   BMC BIOINFORMATICS

High-resolution mapping of open chromatin in the rice genome

(2011) W. Zhang et al.   GENOME RESEARCH

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Evidence of function for conserved noncoding sequences in Arabidopsis thaliana

(2011) Jacob B. Spangler et al.   NEW PHYTOLOGIST

Evolutionary divergence and limits of conserved non-coding sequence detection in plant genomes

(2011) Anna R. Reineke et al.   NUCLEIC ACIDS RESEARCH

Specific expression of LATERAL SUPPRESSOR is controlled by an evolutionarily conserved 3′ enhancer

(2011) Bodo Raatz et al.   PLANT JOURNAL

A mystery unveiled

(2011) Yves Van de Peer   GENOME BIOLOGY

The collapse of gene complement following whole genome duplication

(2010) David Sankoff et al.   BMC GENOMICS

Patching gaps in plant genomes results in gene movement and erosion of colinearity

(2010) T. Wicker et al.   GENOME RESEARCH

Ancient Vertebrate Conserved Noncoding Elements Have Been Evolving Rapidly in Teleost Fishes

(2010) A. P. Lee et al.   MOLECULAR BIOLOGY AND EVOLUTION

Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs

(2010) Margaret R. Woodhouse et al.   PLOS BIOLOGY

Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition

(2009) Michael Freeling   Annual Review of Plant Biology

Conserved noncoding sequences (CNSs) in higher plants

(2009) Michael Freeling et al.   CURRENT OPINION IN PLANT BIOLOGY

Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

(2009) Z. Tian et al.   GENOME RESEARCH

All Human-Specific Gene Losses Are Present in the Genome as Pseudogenes

(2009) Daniel R. Schrider et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Indel-Associated Mutation Rate Varies with Mating System in Flowering Plants

(2009) J. D. Hollister et al.   MOLECULAR BIOLOGY AND EVOLUTION

The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution

(2009) James A. Birchler et al.   NEW PHYTOLOGIST

Genome-Wide Analysis of Genes Targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during Seed Germination in Arabidopsis

(2009) E. Oh et al.   PLANT CELL

How to usefully compare homologous plant genes and chromosomes as DNA sequences

(2008) Eric Lyons et al.   PLANT JOURNAL