Genome-Wide Characterization of Adaptation and Speciation in Tiger Swallowtail Butterflies Using De Novo Transcriptome Assemblies

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Sex Chromosome Mosaicism and Hybrid Speciation among Tiger Swallowtail Butterflies

(2011) Krushnamegh Kunte et al.   PLoS Genetics

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

(2010) Shawn T O'Neil et al.   BMC GENOMICS

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Role of Hybridization in Plant Speciation

(2009) Pamela S. Soltis et al.   Annual Review of Plant Biology

AFLP Linkage Map of Hybridizing Swallowtail Butterflies, Papilio glaucus and Papilio canadensis

(2009) C. B. Winter et al.   JOURNAL OF HEREDITY

Computation for ChIP-seq and RNA-seq studies

(2009) Shirley Pepke et al.   NATURE METHODS

Controlling Type-I Error of the McDonald–Kreitman Test in Genomewide Scans for Selection on Noncoding DNA

(2008) Peter Andolfatto   GENETICS

Genome-wide identification of cuticular protein genes in the silkworm, Bombyx mori

(2008) Ryo Futahashi et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Homoploid hybrid speciation in animals

(2008) JESÚS MAVÁREZ et al.   MOLECULAR ECOLOGY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Characterization of mitochondrial genome of Chinese wild mulberry silkworm, Bomyx mandarina (Lepidoptera: Bombycidae)

(2008) MinHui Pan et al.   Science in China. Series C, Life sciences / Chinese Academy of Sciences

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics

THE RATE OF GENOME STABILIZATION IN HOMOPLOID HYBRID SPECIES

(2007) C. Alex Buerkle et al.   EVOLUTION