An Evolutionary Network of Genes Present in the Eukaryote Common Ancestor Polls Genomes on Eukaryotic and Mitochondrial Origin

Planctomycetes and eukaryotes: A case of analogy not homology

(2011) James O. McInerney et al.   BIOESSAYS

The rhizome of Reclinomonas americana, Homo sapiens, Pediculus humanus and Saccharomyces cerevisiae mitochondria

(2011) Kalliopi Georgiades et al.   Biology Direct

The public goods hypothesis for the evolution of life on Earth

(2011) James O McInerney et al.   Biology Direct

Energetics and genetics across the prokaryote-eukaryote divide

(2011) Nick Lane   Biology Direct

Experimental design and statistical rigor in phylogenomics of horizontal and endosymbiotic gene transfer

(2011) John W Stiller   BMC EVOLUTIONARY BIOLOGY

Bacterial genome chimaerism and the origin of mitochondria

(2011) Ankur Abhishek et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Cell Evolution: Gene Transfer Agents and the Origin of Mitochondria

(2011) Thomas A. Richards et al.   CURRENT BIOLOGY

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes

(2011) O. Popa et al.   GENOME RESEARCH

A Phylometagenomic Exploration of Oceanic Alphaproteobacteria Reveals Mitochondrial Relatives Unrelated to the SAR11 Clade

(2011) Björn Brindefalk et al.   PLoS One

Estimating the timing of early eukaryotic diversification with multigene molecular clocks

(2011) L. W. Parfrey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade

(2011) J. Cameron Thrash et al.   Scientific Reports

Modification of Gene Duplicability during the Evolution of Protein Interaction Network

(2011) Matteo D'Antonio et al.   PLoS Computational Biology

Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes

(2011) Todd J. Treangen et al.   PLoS Genetics

Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires

(2011) Christian M Zmasek et al.   GENOME BIOLOGY

Genome Networks Root the Tree of Life between Prokaryotic Domains

(2010) Tal Dagan et al.   Genome Biology and Evolution

Comparison of 61 Sequenced Escherichia coli Genomes

(2010) Oksana Lukjancenko et al.   MICROBIAL ECOLOGY

Networks of Gene Sharing among 329 Proteobacterial Genomes Reveal Differences in Lateral Gene Transfer Frequency at Different Phylogenetic Depths

(2010) T. Kloesges et al.   MOLECULAR BIOLOGY AND EVOLUTION

The dynamic genome of Hydra

(2010) Jarrod A. Chapman et al.   NATURE

The energetics of genome complexity

(2010) Nick Lane et al.   NATURE

Evolution of diverse cell division and vesicle formation systems in Archaea

(2010) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?

(2010) Simonetta Gribaldo et al.   NATURE REVIEWS MICROBIOLOGY

Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function

(2010) J. A. Cotton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteria with a eukaryotic touch: A glimpse of ancient evolution?

(2010) P. Forterre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes

(2010) S. Kelly et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A new fusion hypothesis for the origin of Eukarya: better than previous ones, but probably also wrong

(2010) Patrick Forterre   RESEARCH IN MICROBIOLOGY

Intermediate Steps

(2010) D. P. Devos et al.   SCIENCE

Bacterial Genes in the Aphid Genome: Absence of Functional Gene Transfer from Buchnera to Its Host

(2010) Naruo Nikoh et al.   PLoS Genetics

Prokaryotic evolution and the tree of life are two different things

(2009) Eric Bapteste et al.   Biology Direct

Hydrogenosomes and Mitosomes: Conservation and Evolution of Functions

(2009) MARK VAN DER GIEZEN   JOURNAL OF EUKARYOTIC MICROBIOLOGY

A Machine-Learning Approach Reveals That Alignment Properties Alone Can Accurately Predict Inference of Lateral Gene Transfer from Discordant Phylogenies

(2009) M. Roettger et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Proteomic Survey of Chlamydomonas reinhardtii Mitochondria Sheds New Light on the Metabolic Plasticity of the Organelle and on the Nature of the  -Proteobacterial Mitochondrial Ancestor

(2009) A. Atteia et al.   MOLECULAR BIOLOGY AND EVOLUTION

Darwinian evolution in the light of genomics

(2009) E. V. Koonin   NUCLEIC ACIDS RESEARCH

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"

(2009) V. Hampl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chlamydial genes shed light on the evolution of photoautotrophic eukaryotes

(2008) Burkhard Becker et al.   BMC EVOLUTIONARY BIOLOGY

The Deep Archaeal Roots of Eukaryotes

(2008) N. Yutin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genes of Cyanobacterial Origin in Plant Nuclear Genomes Point to a Heterocyst-Forming Plastid Ancestor

(2008) O. Deusch et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chlamydiae Has Contributed at Least 55 Genes to Plantae with Predominantly Plastid Functions

(2008) Ahmed Moustafa et al.   PLoS One

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

(2008) T. Dagan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A korarchaeal genome reveals insights into the evolution of the Archaea

(2008) J. G. Elkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The archaebacterial origin of eukaryotes

(2008) C. J. Cox et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The prokaryotic tree of life: past, present…and future?

(2008) James O. McInerney et al.   TRENDS IN ECOLOGY & EVOLUTION

The eukaryotic tree of life: endosymbiosis takes its TOL

(2008) Christopher E. Lane et al.   TRENDS IN ECOLOGY & EVOLUTION