The Plant Proteome Folding Project: Structure and Positive Selection in Plant Protein Families

The Proteome Folding Project: Proteome-scale prediction of structure and function

(2011) K. Drew et al.   GENOME RESEARCH

dN/dS-Based Methods Detect Positive Selection Linked to Trade-Offs between Different Fitness Traits in the Coat Protein of Potato virus Y

(2011) B. Moury et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Comparative Genomics of the Vertebrate Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis of Selective Pressures

(2010) David Alvarez-Ponce et al.   Genome Biology and Evolution

Positive Selection Differs between Protein Secondary Structure Elements in Drosophila

(2010) Kate E. Ridout et al.   Genome Biology and Evolution

Effective Population Size Is Positively Correlated with Levels of Adaptive Divergence among Annual Sunflowers

(2010) J. L. Strasburg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Changes in Rubisco Kinetics during the Evolution of C4 Photosynthesis in Flaveria (Asteraceae) Are Associated with Positive Selection on Genes Encoding the Enzyme

(2010) Maxim V. Kapralov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species

(2010) T. I. Gossmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Patterns of molecular evolution and predicted function in thaumatin-like proteins of Populus trichocarpa

(2010) Jia Ping Zhao et al.   PLANTA

Comparison of sequence profiles. Strategies for structural predictions using sequence information

(2010) Leszek Rychlewski et al.   PROTEIN SCIENCE

Evidence for Pervasive Adaptive Protein Evolution in Wild Mice

(2010) Daniel L. Halligan et al.   PLoS Genetics

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Phylogenetic analysis, structural evolution and functional divergence of the 12-oxo-phytodienoate acid reductase gene family in plants

(2009) Wenyan Li et al.   BMC EVOLUTIONARY BIOLOGY

Selection on Nuclear Genes in a Pinus Phylogeny

(2009) A.E. Palmé et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification

(2009) Guixia Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PhyloWidget: web-based visualizations for the tree of life

(2008) G. E. Jordan et al.   BIOINFORMATICS

Natural selection of protein structural and functional properties: a SNP perspective

(2008) Jinfeng Liu et al.   GENOME BIOLOGY