Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters

Evaluation of methods for detecting conversion events in gene clusters

(2011) Giltae Song et al.   BMC BIOINFORMATICS

Conversion events in gene clusters

(2011) Giltae Song et al.   BMC EVOLUTIONARY BIOLOGY

Positional orthology: putting genomic evolutionary relationships into context

(2011) C. N. Dewey   BRIEFINGS IN BIOINFORMATICS

Computational methods for Gene Orthology inference

(2011) D. M. Kristensen et al.   BRIEFINGS IN BIOINFORMATICS

An Effective Method for Detecting Gene Conversion Events in Whole Genomes

(2010) Chih-Hao Hsu et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

CAGE: Combinatorial Analysis of Gene-Cluster Evolution

(2010) Giltae Song et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Human-Specific Evolution and Adaptation Led to Major Qualitative Differences in the Variable Receptors of Human and Chimpanzee Natural Killer Cells

(2010) Laurent Abi-Rached et al.   PLoS Genetics

Adaptive evolution of young gene duplicates in mammals

(2009) M. V. Han et al.   GENOME RESEARCH

Evolutionary History Reconstruction for Mammalian Complex Gene Clusters

(2009) Yu Zhang et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

KIR2DS4 is a product of gene conversion with KIR3DL2 that introduced specificity for HLA-A*11 while diminishing avidity for HLA-C

(2009) Thorsten Graef et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Origin and Ascendancy of a Chimeric Fusion Gene: The  / -Globin Gene of Paenungulate Mammals

(2009) J. C. Opazo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Berkeley PHOG: PhyloFacts orthology group prediction web server

(2009) Ruchira S. Datta et al.   NUCLEIC ACIDS RESEARCH

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

(2009) J. Muller et al.   NUCLEIC ACIDS RESEARCH

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

(2009) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

(2009) G. Ostlund et al.   NUCLEIC ACIDS RESEARCH

Copy Number Variation of CCL3-like Genes Affects Rate of Progression to Simian-AIDS in Rhesus Macaques (Macaca mulatta)

(2009) Jeremiah D. Degenhardt et al.   PLoS Genetics

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

Lineage-specific diversification of killer cell Ig-like receptors in the owl monkey, a New World primate

(2008) Luis F. Cadavid et al.   IMMUNOGENETICS

Rapid Rates of Lineage-Specific Gene Duplication and Deletion in the α-Globin Gene Family

(2008) Federico G. Hoffmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

An approach of orthology detection from homologous sequences under minimum evolution

(2008) Kyung Mo Kim et al.   NUCLEIC ACIDS RESEARCH

Differential loss of embryonic globin genes during the radiation of placental mammals

(2008) J. C. Opazo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA