4.5 Article

The genetic structure of 3′ untranslated region of the HLA-G gene: polymorphisms and haplotypes

Journal

GENES AND IMMUNITY
Volume 11, Issue 2, Pages 134-141

Publisher

NATURE PUBLISHING GROUP
DOI: 10.1038/gene.2009.74

Keywords

major histocompatibility complex; human leukocyte antigens; HLA-G; 3 ' untranslated region; polymorphism; microRNA

Funding

  1. Brazilian National Research Council [475670/2007-8, 558476/2008-0]
  2. FAPESP/Brazil [07/58420-4, 2009/06191-7]
  3. CNPq/Brazil [151614/2008-3, 504635/2008-5]
  4. Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP) [09/06191-7] Funding Source: FAPESP

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The HLA-G gene is predominantly expressed at the maternal-fetal interface. It has been associated with maternal-fetal tolerance and in the inhibition of cytotoxic T lymphocyte and natural killer cytolytic functions. At least two variations in the 3' untranslated region (UTR) of HLA-G locus are associated with HLA-G expression levels, the 14-bp deletion/insertion polymorphism and the +3142 single-nucleotide polymorphism (SNP). However, this region has not been completely characterized yet. The variability of the 3'UTR of HLA-G gene and its haplotype structure were characterized in 155 individuals from Brazil, as well as HLA-G alleles associated with each of the 3'UTR haplotype. The following eight variation sites were detected: the 14-bp polymorphism and SNPs at the positions +3003T/C, +3010C/G, +3027A/C, +3035C/T, +3142G/C, +3187A/G and +3196C/G. Similarly, 11 different 3'UTR haplotypes were identified and several HLA-G alleles presented only one 3'UTR haplotype. In addition, a high linkage disequilibrium among the variation sites was detected, especially among the 14-bp insertion and the alleles +3142G and +3187A, all previously associated with low mRNA availability, demonstrating that their effects are not independent. The detailed analyses of 3'UTR of the HLA-G locus may shed some light into mechanisms underlying the regulation of HLA-G expression. Genes and Immunity (2010) 11, 134-141; doi: 10.1038/gene.2009.74; published online 1 October 2009

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