- Home
- Publications
- Publication Search
- Publication Details
Title
Copy number variation in the cattle genome
Authors
Keywords
-
Journal
FUNCTIONAL & INTEGRATIVE GENOMICS
Volume 12, Issue 4, Pages 609-624
Publisher
Springer Nature
Online
2012-07-12
DOI
10.1007/s10142-012-0289-9
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Copy number variation of individual cattle genomes using next-generation sequencing
- (2012) D. M. Bickhart et al. GENOME RESEARCH
- Serial translocation by means of circular intermediates underlies colour sidedness in cattle
- (2012) Keith Durkin et al. NATURE
- Population-Genetic Properties of Differentiated Human Copy-Number Polymorphisms
- (2011) Catarina D. Campbell et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping
- (2011) Bujie Zhan et al. BMC GENOMICS
- Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery
- (2011) Paul Stothard et al. BMC GENOMICS
- Genomic characteristics of cattle copy number variations
- (2011) Yali Hou et al. BMC GENOMICS
- A high-resolution integrated map of copy number polymorphisms within and between breeds of the modern domesticated dog
- (2011) Thomas J Nicholas et al. BMC GENOMICS
- Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle
- (2011) Yali Hou et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Analysis of copy number variants in the cattle genome
- (2011) James W. Kijas et al. GENE
- Relating CNVs to transcriptome data at fine resolution: Assessment of the effect of variant size, type, and overlap with functional regions
- (2011) A. Schlattl et al. GENOME RESEARCH
- GAGE: A critical evaluation of genome assemblies and assembly algorithms
- (2011) S. L. Salzberg et al. GENOME RESEARCH
- Characterising chromosome rearrangements: recent technical advances in molecular cytogenetics
- (2011) S Le Scouarnec et al. HEREDITY
- Hot topic: Performance of bovine high-density genotyping platforms in Holsteins and Jerseys
- (2011) G. Rincon et al. JOURNAL OF DAIRY SCIENCE
- Copy number variation in the domestic dog
- (2011) Carlos E. Alvarez et al. MAMMALIAN GENOME
- Sequence-based characterization of structural variation in the mouse genome
- (2011) Binnaz Yalcin et al. NATURE
- Mapping copy number variation by population-scale genome sequencing
- (2011) Ryan E. Mills et al. NATURE
- Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
- (2011) Dalila Pinto et al. NATURE BIOTECHNOLOGY
- Discovery and genotyping of genome structural polymorphism by sequencing on a population scale
- (2011) Robert E Handsaker et al. NATURE GENETICS
- Detection of structural variants and indels within exome data
- (2011) Emre Karakoc et al. NATURE METHODS
- Genome structural variation discovery and genotyping
- (2011) Can Alkan et al. NATURE REVIEWS GENETICS
- A Novel Unstable Duplication Upstream of HAS2 Predisposes to a Breed-Defining Skin Phenotype and a Periodic Fever Syndrome in Chinese Shar-Pei Dogs
- (2011) Mia Olsson et al. PLoS Genetics
- Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly
- (2011) Kim Wong et al. GENOME BIOLOGY
- Structural Variation in the Human Genome and its Role in Disease
- (2010) Paweł Stankiewicz et al. Annual Review of Medicine
- Detection and characterization of novel sequence insertions using paired-end next-generation sequencing
- (2010) Iman Hajirasouliha et al. BIOINFORMATICS
- Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery
- (2010) Fereydoun Hormozdiari et al. BIOINFORMATICS
- A deletion mutation in bovine SLC4A2 is associated with osteopetrosis in Red Angus cattle
- (2010) Stacey N Meyers et al. BMC GENOMICS
- Analysis of copy loss and gain variations in Holstein cattle autosomes using BeadChip SNPs
- (2010) Eyal Seroussi et al. BMC GENOMICS
- Copy number variation in the bovine genome
- (2010) João Fadista et al. BMC GENOMICS
- An initial comparative map of copy number variations in the goat (Capra hircus) genome
- (2010) Luca Fontanesi et al. BMC GENOMICS
- An initial map of chromosomal segmental copy number variations in the chicken
- (2010) Xiaofei Wang et al. BMC GENOMICS
- Identification of copy number variations and common deletion polymorphisms in cattle
- (2010) Joon Bae et al. BMC GENOMICS
- Personal genome sequencing: current approaches and challenges
- (2010) M. Snyder et al. GENES & DEVELOPMENT
- Analysis of copy number variations among diverse cattle breeds
- (2010) G. E. Liu et al. GENOME RESEARCH
- Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome
- (2010) A. R. Quinlan et al. GENOME RESEARCH
- Copy number variation, chromosome rearrangement, and their association with recombination during avian evolution
- (2010) M. Volker et al. GENOME RESEARCH
- A first comparative map of copy number variations in the sheep genome
- (2010) L. Fontanesi et al. GENOMICS
- Initial analysis of copy number variations in cattle selected for resistance or susceptibility to intestinal nematodes
- (2010) George E. Liu et al. MAMMALIAN GENOME
- Genome remodelling in a basal-like breast cancer metastasis and xenograft
- (2010) Li Ding et al. NATURE
- Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls
- (2010) NATURE
- Functional impact of global rare copy number variation in autism spectrum disorders
- (2010) Dalila Pinto et al. NATURE
- Public data archives for genomic structural variation
- (2010) Deanna M Church et al. NATURE GENETICS
- Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing
- (2010) Hansoo Park et al. NATURE GENETICS
- Characterization of missing human genome sequences and copy-number polymorphic insertions
- (2010) Jeffrey M Kidd et al. NATURE METHODS
- mrsFAST: a cache-oblivious algorithm for short-read mapping
- (2010) Faraz Hach et al. NATURE METHODS
- Elusive Copy Number Variation in the Mouse Genome
- (2010) Avigail Agam et al. PLoS One
- A Novel Mutation in the Maternally Imprinted PEG3 Domain Results in a Loss of MIMT1 Expression and Causes Abortions and Stillbirths in Cattle (Bos taurus)
- (2010) Krzysztof Flisikowski et al. PLoS One
- Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing
- (2010) J. C. Roach et al. SCIENCE
- Diversity of Human Copy Number Variation and Multicopy Genes
- (2010) Peter H. Sudmant et al. SCIENCE
- Towards a comprehensive structural variation map of an individual human genome
- (2010) Andy W Pang et al. GENOME BIOLOGY
- The variant red coat colour phenotype of Holstein cattle maps to BTA27
- (2009) D. L. Dreger et al. ANIMAL GENETICS
- Copy Number Variation in Human Health, Disease, and Evolution
- (2009) Feng Zhang et al. Annual Review of Genomics and Human Genetics
- A geometric approach for classification and comparison of structural variants
- (2009) S. Sindi et al. BIOINFORMATICS
- SOAP2: an improved ultrafast tool for short read alignment
- (2009) R. Li et al. BIOINFORMATICS
- Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
- (2009) K. Ye et al. BIOINFORMATICS
- CNV-seq, a new method to detect copy number variation using high-throughput sequencing
- (2009) Chao Xie et al. BMC BIOINFORMATICS
- Analysis of recent segmental duplications in the bovine genome
- (2009) George E Liu et al. BMC GENOMICS
- The genomic architecture of segmental duplications and associated copy number variants in dogs
- (2009) T. J. Nicholas et al. GENOME RESEARCH
- The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group
- (2009) S.-M. Ahn et al. GENOME RESEARCH
- Sensitive and accurate detection of copy number variants using read depth of coverage
- (2009) S. Yoon et al. GENOME RESEARCH
- Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
- (2009) F. Hormozdiari et al. GENOME RESEARCH
- Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
- (2009) K. J. McKernan et al. GENOME RESEARCH
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- Copy number variants, diseases and gene expression
- (2009) C. N. Henrichsen et al. HUMAN MOLECULAR GENETICS
- Finding the missing heritability of complex diseases
- (2009) Teri A. Manolio et al. NATURE
- A small-cell lung cancer genome with complex signatures of tobacco exposure
- (2009) Erin D. Pleasance et al. NATURE
- A comprehensive catalogue of somatic mutations from a human cancer genome
- (2009) Erin D. Pleasance et al. NATURE
- Large, rare chromosomal deletions associated with severe early-onset obesity
- (2009) Elena G. Bochukova et al. NATURE
- Copy number variation at 1q21.1 associated with neuroblastoma
- (2009) Sharon J. Diskin et al. NATURE
- Autism genome-wide copy number variation reveals ubiquitin and neuronal genes
- (2009) Joseph T. Glessner et al. NATURE
- Origins and functional impact of copy number variation in the human genome
- (2009) Donald F. Conrad et al. NATURE
- Complex landscapes of somatic rearrangement in human breast cancer genomes
- (2009) Philip J. Stephens et al. NATURE
- Single-molecule sequencing of an individual human genome
- (2009) Dmitry Pushkarev et al. NATURE BIOTECHNOLOGY
- Personalized copy number and segmental duplication maps using next-generation sequencing
- (2009) Can Alkan et al. NATURE GENETICS
- MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions
- (2009) Seunghak Lee et al. NATURE METHODS
- Computational methods for discovering structural variation with next-generation sequencing
- (2009) Paul Medvedev et al. NATURE METHODS
- Sense from sequence reads: methods for alignment and assembly
- (2009) Paul Flicek et al. NATURE METHODS
- BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
- (2009) Ken Chen et al. NATURE METHODS
- Recurring Mutations Found by Sequencing an Acute Myeloid Leukemia Genome
- (2009) Elaine R. Mardis et al. NEW ENGLAND JOURNAL OF MEDICINE
- Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances
- (2009) T. LaFramboise NUCLEIC ACIDS RESEARCH
- Development and Characterization of a High Density SNP Genotyping Assay for Cattle
- (2009) Lakshmi K. Matukumalli et al. PLoS One
- The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
- (2009) et al. SCIENCE
- Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds
- (2009) et al. SCIENCE
- The origins and impact of primate segmental duplications
- (2009) Tomas Marques-Bonet et al. TRENDS IN GENETICS
- Copy Number Variation in Intron 1 of SOX5 Causes the Pea-comb Phenotype in Chickens
- (2009) Dominic Wright et al. PLoS Genetics
- PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data
- (2009) Jan O Korbel et al. GENOME BIOLOGY
- A whole-genome assembly of the domestic cow, Bos taurus
- (2009) Aleksey V Zimin et al. GENOME BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Sequence Divergence Impedes Crossover More Than Noncrossover Events During Mitotic Gap Repair in Yeast
- (2008) C. Welz-Voegele et al. GENETICS
- Mapping DNA structural variation in dogs
- (2008) W.-K. Chen et al. GENOME RESEARCH
- The new paradigm of flow cell sequencing
- (2008) R. A. Holt et al. GENOME RESEARCH
- A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep
- (2008) B. J. Norris et al. GENOME RESEARCH
- De novo fragment assembly with short mate-paired reads: Does the read length matter?
- (2008) M. J. Chaisson et al. GENOME RESEARCH
- ALLPATHS: De novo assembly of whole-genome shotgun microreads
- (2008) J. Butler et al. GENOME RESEARCH
- Mapping short DNA sequencing reads and calling variants using mapping quality scores
- (2008) H. Li et al. GENOME RESEARCH
- De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer
- (2008) D. Hernandez et al. GENOME RESEARCH
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Copy-number variations associated with neuropsychiatric conditions
- (2008) Edwin H. Cook Jr et al. NATURE
- The complete genome of an individual by massively parallel DNA sequencing
- (2008) David A. Wheeler et al. NATURE
- The diploid genome sequence of an Asian individual
- (2008) Jun Wang et al. NATURE
- DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
- (2008) Timothy J. Ley et al. NATURE
- Mapping and sequencing of structural variation from eight human genomes
- (2008) Jeffrey M. Kidd et al. NATURE
- Accurate whole human genome sequencing using reversible terminator chemistry
- (2008) David R. Bentley et al. NATURE
- Mouse segmental duplication and copy number variation
- (2008) Xinwei She et al. NATURE GENETICS
- Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids
- (2008) Christopher C Park et al. NATURE GENETICS
- Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing
- (2008) Peter J Campbell et al. NATURE GENETICS
- Distribution and functional impact of DNA copy number variation in the rat
- (2008) Victor Guryev et al. NATURE GENETICS
- Integrated detection and population-genetic analysis of SNPs and copy number variation
- (2008) Steven A McCarroll et al. NATURE GENETICS
- High-resolution mapping of copy-number alterations with massively parallel sequencing
- (2008) Derek Y Chiang et al. NATURE METHODS
- A Snapshot of CNVs in the Pig Genome
- (2008) João Fadista et al. PLoS One
- The impact of next-generation sequencing technology on genetics
- (2008) Elaine R. Mardis TRENDS IN GENETICS
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now