Article
Environmental Sciences
Qiqi Xue, Lingwei Sheng, Junjie Guo, Minghui Zou, Qiao Teng, Sijia Xu, Yuanyuan Li, Jinhong Zhao
Summary: In this study, a loop-mediated isothermal amplification (LAMP) method was successfully established for the detection of the Dermatophagoides farinae allergen. This method showed higher sensitivity, specificity, and efficiency compared to conventional PCR. It did not cross-react with other arthropod species commonly found in indoor dust. This study provides a potential model for the rapid detection of allergens produced by other house dust mites in the future.
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
(2023)
Article
Chemistry, Analytical
Yong Li, Shuo Lin, Yuxin Xue, Qianyue Jia, Ye Wang, Yingqiu Xie, Chao Shi, Cuiping Ma
Summary: BNNPs have been proven to significantly improve the specificity and sensitivity of PCR and LAMP amplification reactions, expanding the application range of nucleic acid detection and increasing detection sensitivity.
ANALYTICA CHIMICA ACTA
(2023)
Article
Chemistry, Analytical
Wenjuan Wu, Congcong Yin, Aiqin Yue, Jingping Niu, Weijun Du, Dingbin Liu, Jinzhong Zhao
Summary: In this study, a loop-mediated isothermal amplification (LAMP) assay was developed for visual and rapid detection of the major prevalent SMV strain in China. The assay showed high analytical performance and potential for early detection of SMV-SC7-associated plant diseases.
SENSORS AND ACTUATORS B-CHEMICAL
(2022)
Article
Microbiology
Ahmad Mukhlis Abdul Rahman, Julian Ransangan, Vijay Kumar Subbiah
Summary: A rapid, simple, sensitive, and specific detection method based on loop-mediated isothermal amplification (LAMP) has been developed for the detection of Vibrio harveyi contamination. The addition of loop primers reduces the reaction time of LAMP by more than half, and with the use of SYBR Green, results can be obtained within 10 to 15 minutes without gel electrophoresis. LAMP has greater sensitivity compared to PCR.
Article
Food Science & Technology
Antuo Hu, Liangyu Kong, Zhaoxin Lu, Haibo Zhou, Xiaomei Bie
Summary: In this study, a detection method was constructed by combining LAMP reaction and CRISPR/Cas12a, which has good specificity and sensitivity. The detection limit of this method is 2.5 CFU/mL and 5 fg/uL, and the detection of artificially contaminated samples can be achieved within 30 minutes. This method allows for more accurate quantification of the template and can be used with visual observation utilizing a UV lamp, making it highly valuable in places with limited medical conditions.
Article
Chemistry, Analytical
Guoxia Zheng, Qian Gao, Youwei Jiang, Ling Lu, Jianfeng Li, Xingcai Zhang, Hongyu Zhao, Panpan Fan, Yutong Cui, Furong Gu, Yunhua Wang
Summary: By combining digital microfluidic (DMF) with loop-mediated isothermal amplification (LAMP), an automated instrument-compact DMF-LAMP device was developed for rapid and sensitive detection of Vibrio parahaemolyticus. Proper mixing was found to enhance the amplification reaction rate, shorten the amplification time, and improve detection sensitivity of the device. The device showed high sensitivity with a detection limit of <0.23 x 10(3) CFU/g, making it a promising sample-to-answer system for quick and sensitive analysis.
ANALYTICAL CHEMISTRY
(2021)
Article
Plant Sciences
Huiying Sun, Lin Sun, Liuliu Yang, Zehao Wang, Zihao Xia, Xinyu Yang, Zhiwei Jiao, Jie Feng, Yue Liang
Summary: A rapid and sensitive detection method based on LAMP technology was successfully developed in this study for accurate detection of the causal agent of sunflower black stem. This method not only has the characteristics of rapid and sensitive detection, but also can be applied to different types of infected tissues and seed samples, which is of great significance for assessing the prevalence and implementing sustainable management of the disease.
Article
Food Science & Technology
Nor Asmara Tasrip, Mohd Nasir Mohd Desa, Nur Fadhilah Khairil Mokhtar, Nurhayatie Sajali, Amalia Mohd Hashim, Md. Eaqub Ali, Cheah Yoke Kqueen
Summary: The study successfully detected porcine DNA in gelatin products using porcine-specific LAMP technology, demonstrating excellent specificity, sensitivity, and rapidity.
JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE
(2021)
Article
Chemistry, Analytical
Huan-Huan Zhu, Yuan Li, Li-Xia Wu, Ke-Sheng Wang, Yue Zhang, Qiang-Yuan Fan, Zun-Zhen Ming, Wei-Qin Chen, Wei-Wei Liu
Summary: Loop-mediated isothermal amplification (LAMP) is a promising diagnostic tool for genetic amplification, known for its speed, simplicity, efficiency, and sensitivity. This research introduces an internal heating method for LAMP using magnetic nanoparticles (MNPs) called nano-LAMP, which can detect low concentrations of HPV and has been validated in clinical samples.
Article
Environmental Sciences
Xiaotian Han, Ting Zhao, Tian Yan, Rencheng Yu
Summary: A LAMP method coupled with a LFD was developed for detecting harmful algae Karenia mikimotoi, showing high sensitivity and specificity, indicating a promising approach for detecting and monitoring harmful algal blooms.
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
(2022)
Article
Biotechnology & Applied Microbiology
Yuan-qing Hu, Xian-hui Huang, Li-qing Guo, Zi-chen Shen, Lin-xue Lv, Feng-xia Li, Zan-hu Zhou, Dan-feng Zhang
Summary: Vibrio parahaemolyticus is a significant foodborne pathogen causing gastroenteritis in humans, with the bla(CARB-17) gene being a novel species-specific genetic marker. The LAMP-LFD assay developed in this study showed high specificity for detecting V. parahaemolyticus, with successful detection of the pathogen in contaminated and natural food samples. This method displayed a sensitivity 100-fold higher than conventional PCR, making it a suitable diagnostic tool for detecting V. parahaemolyticus in aquatic foods.
JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY
(2021)
Article
Multidisciplinary Sciences
Daniel Urrutia-Cabrera, Roxanne Hsiang-Chi Liou, Jiang-Hui Wang, Jianxiong Chan, Sandy Shen-Chi Hung, Alex W. Hewitt, Keith R. Martin, Thomas L. Edwards, Patrick Kwan, Raymond Ching-Bong Wong
Summary: This study compares the performance of three LAMP-based assays targeting different regions of SARS-CoV-2, showing that all three assays can accurately detect 1000 RNA copies in 30 minutes, with the Gene N assay exhibiting no false positives. This highlights the significance of LAMP as a rapid, highly sensitive detection method for SARS-CoV-2 diagnostics.
SCIENTIFIC REPORTS
(2021)
Article
Agronomy
Lea Rako, Arati Agarwal, Linda Semeraro, Adam Broadley, Brendan C. Rodoni, Mark J. Blacket
Summary: The novel Khapra and 18S LAMP assays are able to amplify target beetle DNA quickly and sensitively, even from partially degraded samples, improving speed, accuracy, and confidence of detection at incursion points. The assays are portable and easy to implement in field conditions with limited resources, aiding rapid biosecurity responses in countries affected by Khapra beetle infestations.
PEST MANAGEMENT SCIENCE
(2021)
Article
Chemistry, Applied
Yi Li, Hanyue Xue, Yanjing Fei, Ying Yang, Danping Huang, Libin Wang, Xiaohui Xiong, Xiong Xiong
Summary: To improve the suitability for naked-eye inspection, a strategy based on the fluorescence property of SYTO 9 and HNB was proposed, and a novel dual-color fluorescence LAMP (dfLAMP) assay was developed for visual detection of Atlantic salmon. The optimized dfLAMP assay has proved its specificity and can detect as little as 1 fg Atlantic salmon DNA.
Article
Plant Sciences
Qingcong He, Dongwei Wang, Bei Tang, Jian Wang, Deyong Zhang, Yong Liu, Feixue Cheng
Summary: In this study, specific primers were designed for rapid identification and quantification of the plant-parasitic nematode Meloidogyne graminicola in soil. Both LAMP and real-time PCR showed higher sensitivity in detecting the nematode compared to conventional PCR. These methods have the potential to provide a useful platform for rapid species identification and quantification of economically important PPNs.
Article
Infectious Diseases
Dingqiang Chen, Ling Yang, Brian M. Peters, Junyan Liu, Lin Li, Bing Li, Zhenbo Xu, Mark E. Shirtliff
MICROBIAL DRUG RESISTANCE
(2019)
Article
Multidisciplinary Sciences
Jian Miao, Shiqi Lin, Thanapop Soteyome, Brian M. Peters, Yanmei Li, Huishan Chen, Jianyu Su, Lin Li, Bing Li, Zhenbo Xu, Mark E. Shirtliff, Janette M. Harro
SCIENTIFIC REPORTS
(2019)
Article
Immunology
Mohd M. Khan, Supaksorn Chattagul, Bao Q. Tran, Jeffrey A. Freiberg, Aleksandra Nita-Lazar, Mark E. Shirtliff, Rasana W. Sermswan, Robert K. Ernst, David R. Goodlett
PATHOGENS AND DISEASE
(2019)
Article
Immunology
Janette M. Harro, Yvonne Achermann, Jeffrey A. Freiberg, Devon L. Allison, Kristen J. Brao, Dimitrius P. Marinos, Salar Sanjari, Jeff G. Leid, Mark E. Shirtliff
INFECTION AND IMMUNITY
(2020)
Article
Microbiology
Janette M. Harro, Mark E. Shirtliff, William Arnold, Jennifer M. Kofonow, Chad Dammling, Yvonne Achermann, Kristen Brao, Javad Parvizi, Jeff G. Leid
JOURNAL OF CLINICAL MICROBIOLOGY
(2020)
Article
Food Science & Technology
Jin Chu, Peter Ho, Caroline Orfila
FOOD AND BIOPROCESS TECHNOLOGY
(2020)
Article
Surgery
Ledibabari M. Ngaage, Adekunle Elegbede, Kristen Brao, Karan Chopra, Arvind U. Gowda, Arthur J. Nam, Robert K. Ernst, Mark E. Shirtliff, Janette Harro, Yvonne M. Rasko
PLASTIC AND RECONSTRUCTIVE SURGERY
(2020)
Article
Immunology
Kristen J. Brao, Brendan P. Wille, Joshua Lieberman, Robert K. Ernst, Mark E. Shirtliff, Janette M. Harro
INFECTION AND IMMUNITY
(2020)
Article
Agriculture, Multidisciplinary
Liting Wan, Lin Li, Janette M. Harro, Stephen W. Hoag, Bing Li, Xia Zhang, Mark E. Shirtliff
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2020)
Article
Orthopedics
Kristen Brao, Patrick Greenwell, Kuei Ling Hsu, Dimitrius Marinos, Joseph P. Stains, James P. Hovis, Manjari Joshi, Mark E. Shirtliff, Robert V. O'Toole, Janette M. Harro
Summary: Intraoperative tobramycin powder was effective in preventing bone infection caused by tobramycin-resistant Enterobacter cloacae in a rabbit fixation model, demonstrating the utility of powdered antibiotics in preventing surgical site infection.
JOURNAL OF ORTHOPAEDIC TRAUMA
(2021)
Article
Microbiology
Jeffrey A. Freiberg, Yoann Le Breton, Janette M. Harro, Devon L. Allison, Kevin S. McIver, Mark E. Shirtliff
Article
Chemistry, Applied
Liting Wan, Lin Li, Xia Zhang, Bing Li, Janette M. Harro, Mark E. Shirtliff
Summary: This study aimed to investigate the impacts of dietary lipid composition and content on the cecal and fecal microbiota in mice. The results showed that increasing the dietary palm stearin (PS) level promoted the growth of Firmicutes and resulted in higher lipid and bile acid content in feces. However, increasing palm olein (PO) intake did not affect the microbial structure. Only at a high-fat level, PS (compared to PO) induced the observed microbial shifts. These findings highlight the importance of both lipid quality and quantity on gut microbiota.
Article
Microbiology
Jontana Allkja, Thomas Bjarnsholt, Tom Coenye, Paul Cos, Adyary Fallarero, Joe J. Harrison, Susana P. Lopes, Antonio Oliver, Maria Olivia Pereira, Gordon Ramage, Mark E. Shirtliff, Paul Stoodley, Jeremy S. Webb, Sebastian A. J. Zaat, Darla M. Goeres, Nuno Filipe Azevedo
Meeting Abstract
Pediatrics
K. Brao, B. Wille, J. Lieberman, R. K. Ernst, M. Shirtliff, J. Harro
PEDIATRIC PULMONOLOGY
(2020)
Article
Orthopedics
Roman M. Natoli, Janette Harro, Mark Shirtliff
TECHNIQUES IN ORTHOPAEDICS
(2020)